Hirundo rustica (Barn swallow): 120758078
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Entry
120758078 CDS
T09369
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hrt04121
]
120758078 (PDZRN3)
Enzymes [BR:
hrt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120758078 (PDZRN3)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120758078 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
zf-rbx1
PDZ_Tricorn
TRAF3_RING
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
120758078
NCBI-ProteinID:
XP_039931819
LinkDB
All DBs
Position
12:complement(17584212..17715420)
Genome browser
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLMLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAAEPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAKAFGAAHEPQLVDVGTQTDI
TFEHIMALSKMGSPTPPVPVLDSYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTS
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTL
GSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYSLYYHNSTLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLR
RTAEGINCQGNEGAVAYNVSQKNPCAGSESHESSAGKCHSSTKDPDLGKQLESKERKGSD
GSKSPTHGQKASGSYASPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDLASGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaggtgctggaggacccgctgaccaccccctgcggacacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggccgtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctctccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgacgtggaagcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctgatgctgacccacggcgagcgccgggccggcggccacggc
tgcctgcgggcgctgcgcgcacacggggccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggctctgcgcgcaggcaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgtttcacg
cagtacagcgcccgcctggacgcgctggcccgagcccgcgcggccgagcccggcaagggt
gaagaaactaaagcactgactctggtcctccatcgggactctggatctcttggatttaat
attattggtggccggccgtgcgtggacaatcaggatgggtcatcgagcgaaggaattttt
gtgtcgaaaatagttgacagcgggcctgctgctaaggaaggagggctgcaaatccacgac
aggattatcgaggtcaatgggaaggatttatccaaagccacccacgagcaggcggtggaa
gcgttcaaaacagccaaggagcccatcgtggtgcaggtgctgaggagggccccgcgcgcc
aaggccttcggcgcggcccacgagccgcagctggtggatgtgggcacgcagaccgacatc
accttcgagcacatcatggccctcagcaagatgggctcgcccacacctcctgtccccgtg
ctggactcctacctgctgcctgaggaccatccatccgtgcatgaatactacgacccaaat
gactacatgggaggaattcatcaagaaatggaccgggatgagttggaattagaggaagtg
gatttacaccgagtgaacagccaggacaagcttggcctcactgtctgttacagaacggat
gatgaagatgacatgggtatttatgtgagtgagattgaccccaacagcatcgctgcgaag
gacgggcggctccgagaaggggatcgcattatccagatcaatggcatcgaggtgcagaac
cgagaggaagctgtggcacttctctccagtgaggagagcaagaatatctccttacttgtg
gcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaacgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttacttcc
agcatgcttcagcagaagaagcacgaggaggatggaggcaccacagacacagccacgatt
ttgtccaaccagcacgagaaggacagcggcgtggggcgcacggacgacagcactcgcaac
gacgagagctccgagcaggagaacaacggggacgatcacaccacctcctccaacactttg
gggagccagaagaagctgacctacagccacgacaccctgggaagtggggacatgcagttc
agcaatgagtcgttcatctcggccgactgcaccgacgtcgacttcctgggcatccctgtg
gacgagtgcgagcggttccgggagctgctggagctgaagtgccaggtgaagtctgccaac
ccctacagcctgtattaccataacagcaccctggagatgagcaaaagcgaccaagagagc
gtcgacagagagctggagatgctcaacgaggagctgcgcaacatcgagctggagtgcctg
aacatcgtgagagcccacaaaatgcagcagctgaaggagcagtaccgggagccctggatg
ctgcacaacagcggcttccgaaactacaacaccagcatcgacgcccgcaggcacgagctc
tcggacatcaccgagctgcccgagaaatctgacaaggacagctcgagtgcctacaacacg
ggcgagagctgccggagcactccgctcacgctggagatctcccccgacaattccctgcgc
agaactgcagaaggcattaactgtcaaggaaacgagggggcagtggcgtataatgtctcc
caaaagaatccgtgcgccggctcggagagccatgaatccagcgctgggaaatgccactcc
tccactaaagatcccgaccttggcaagcagctggagagcaaggagaggaaaggcagcgat
ggcagcaaaagccccactcacggtcagaaagcctcgggctcctacgcgtccccctaccac
cactccccgtacaaacatgctcacatccctgcccacgcccagcactaccagagctacatg
cagctgatccagcagaaatctgccgtggaatacgcgcagagccagatgagcctggtgagc
atgtgcaaggacttggcctcgggccagagcgagccgaggatggagtggaaggtgaaggtc
aggagcgacgggacgcgctacatcaccaagaggccggtgagggacaggctgctgagggaa
cgggccataaagatcaaggaggagcgcagtgggatgaccacggatgacgacgccatcagt
gagatgaagatgggccggtactggagcaaggaggagaggaagcagcacttggtgaaagcc
aaggagcagaggaggcggcgggagttcatgatgcagagcaggttagagtgcttaaaggaa
cagcaaggcgcagaggagaagaaggagatgaacatcattgaactgagccacaaaaaaatg
atgaagaagagaaacaaaaaaatatttgacaattggatgacgatccaagaactgctaacc
catggaacaaagtcgccggacggcacgcgggtgtacaattccttcctgtcagtgactact
gtataa
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integrated database retrieval system
