Hirundo rustica (Barn swallow): 120758109
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Entry
120758109 CDS
T09369
Symbol
POC1A
Name
(RefSeq) POC1 centriolar protein homolog A isoform X4
KO
K16482
centriolar protein POC1
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hrt03036
]
120758109 (POC1A)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hrt03037
]
120758109 (POC1A)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
120758109 (POC1A)
Cilium and associated proteins [BR:
hrt03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120758109 (POC1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
eIF2A
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_WDR75_2nd
Tricorn_2nd
Beta-prop_WDR35_TULP_N
RMC1_N
PROPPIN
Cytochrom_D1
Beta-prop_ACSF4
Beta-prop_Nup120_160
TLD
Nucleoporin_N
DUF7914
Motif
Other DBs
NCBI-GeneID:
120758109
NCBI-ProteinID:
XP_039931891
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Position
12:4130158..4200902
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AA seq
405 aa
AA seq
DB search
MAAVCEEDPSLERHFKGHRDAVTSVDFSCAKKQLVSGSMDSSLMIWSMKPQMRAYRFVGH
KDAVLCVHFSPSGHLVASGSRDKTVRLWIPNVKGESTVFKAHTGTVRSVHFSNDGQSLVT
ASDDKTVKVWTVHRQKFLFSLSQHINWVRCARFSPDGRLIVSSSDDKTVKLWDKTSRECI
HSFCEHGGFVNHVDFHPSGNCIAAGGTDNTVKLWDVRMNRLLQHYQVHSSVVNSLSFHPS
GNYLVTASSDSTLKILDLLEGRLLYTLHGHQGPATCVAFSRDGDFFASGGSDEQVMVWKT
NFDADYGDVVKPQKYGSSVDGTHGTGQSEMDCGVHHQKTKTQDSGRTHEQQDEETSLADT
LEHIMGQLDVLTQTVSILEQRLTLTEDKLKECLENQQKIIQKKTN
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgtgtgcgaggaagatccatccctggagaggcacttcaagggccacagagat
gctgtcactagtgtggacttcagttgtgctaagaaacaattggtgagtggctcaatggat
tcgtccctgatgatctggagtatgaagcctcagatgagagcctatcgctttgtgggccac
aaagatgcagttttgtgtgtccatttctcaccttctggtcaccttgtggcttcaggttct
agagacaaaacagtccgtttgtggatccctaatgtcaaaggagaatcgactgtgttcaag
gctcacacagggactgtgaggagtgttcatttctccaacgatgggcagtccttagttaca
gcttctgatgacaaaacagtcaaagtgtggacggttcacaggcagaagtttctgttctca
ctgagtcagcacatcaactgggttcgctgtgccagattctctcctgatggacgattgata
gtgtcatccagtgatgataaaactgtcaagctgtgggacaaaaccagcagagaatgcatc
cactccttctgtgagcatggagggtttgtgaaccacgtggatttccatcccagcggtaac
tgcattgccgcggggggcacggacaacacggtgaagctctgggacgtcaggatgaacagg
ctgcttcagcattaccaagtgcacagctctgtggtcaacagtctttcctttcatccgtcc
ggaaactacctggttactgcttctagtgattcaactcttaagattctggacttgctggaa
ggaagacttctctatactctgcatggtcaccagggaccagctacctgtgtagcattttca
agagacggagacttttttgcttctggaggttctgatgaacaggtgatggtgtggaagact
aactttgatgctgattatggtgatgtggtgaaaccccagaaatatggcagcagtgtggat
gggacccatggcactgggcagtcagaaatggattgtggcgttcatcatcagaaaacaaaa
actcaggattctggtaggacccatgagcagcaagacgaggagaccagtcttgcagatacc
ctggagcatattatgggacagctggatgttctgactcagacagtttccatcctggagcag
aggctgacactcaccgaagacaagctgaaggaatgtcttgagaatcagcagaaaatcatt
cagaaaaaaacaaactga
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