Hirundo rustica (Barn swallow): 120758198
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Entry
120758198 CDS
T09369
Symbol
DCAF1
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hrt01001
]
120758198 (DCAF1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hrt04121
]
120758198 (DCAF1)
Enzymes [BR:
hrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120758198 (DCAF1)
Protein kinases [BR:
hrt01001
]
Serine/threonine kinases: Other
Other
120758198 (DCAF1)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120758198 (DCAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
ANAPC4_WD40
LisH
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
120758198
NCBI-ProteinID:
XP_039932117
LinkDB
All DBs
Position
12:complement(6178887..6226501)
Genome browser
AA seq
1505 aa
AA seq
DB search
MTSGSGHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDR
HPGRADPECMLGHLLRILFKNDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAV
VFQEKEGIVENLFKWAREADQPLRTYATGLLGGAMENQDIAANYRDENSQLVALVLRRLR
ELQVTEMTTKQENKRPSPRKVPSDPLLPLDEEAVDMDYGDMTVDGEQEEVSGDMEISFHL
DSSHKTSSRVNSAAKLDDGGVRKSKSGKQHERDGFRKAKQKLGFSTSEPERMFVELSNSS
WSEMSLWVIGSNYTLYPLTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMYYIDLK
RTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLSYN
QDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRHDGL
RRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRRYFEAHLAIKLEQVKQSL
QRTEGGILVHPQPPYKACSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLMLQL
ISIACNWKTYYARNDTVRYALDVLAILTVVPKIQLQLAEPVDVLDEAGSTVSTVGISIIL
GVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQAPKSSEHTLA
KMWNVVQSNNGIKVLLSLLSVKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSS
CQIQQLMKEPVLQDKRSEHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRI
TFPEKELLLLIRNHLISKGLGETASVLTKEADLPMTAASHSSAFTPVAAAASPVTLPRTP
RMANGISARLSSHAAVGSAATSVHAQARPSASQGPPALPGPSYASNSPLIGRISFVRERP
SPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVA
TCPPFSLFTPHQCPEPKQRRQAPSNFTSRLTRRAAFPKYGGVDGGCFDRHLIFSRFRPIS
VFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPS
RDGSLLLTSATWSQPLSALWGMKSVFDMKHSFPDDHYVEFSKHSQDRVIGTKGDIAHIYD
IQTGNKLLTLFNPDLANNYKKNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMTISG
VFHPNGLEVIVNTEIWDLRTFHLLHTVPALDQCRVVFNYTGTVMYGAMLQADDEDDLLEE
RMRSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDSKDCYLAVIENQGSMDAMNMDTVC
RLYEVGRQRLAEDEEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEEDENN
ENAGEDGENDFSPSDDEEIANLLEEGDEGEDEDSDADEEVELILGDTDSSDNSDLEDDII
LSLNE
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaggatctgggcatgtggactccaaggctgagctcactactttgcttgagcaa
tgggagaaagagcatggcagcgggcaggacatggtccctattctcaccagaatgtctgag
ctgattgagaaggagactgaagagtatcgcaaaggggacccagacccgttcgatgaccga
cacccaggtcgggcagacccggagtgcatgcttggtcacttgctgaggatactcttcaag
aatgatgatttcatgaatgcgctagtgaatgcttatgtgatgacaagcagagaacctcca
ctaaacactgctgcctgcaggcttctgctggacatcatgccaggactggaaacagctgtt
gtctttcaggaaaaggaaggcatagtggaaaatctctttaagtgggcacgagaggctgat
cagccactgaggacatatgcaacgggactgttgggaggagctatggaaaaccaggacatt
gctgcaaattacagggatgagaactcacagttggtggctctggtgcttcgtcggctacga
gagttgcaggtcacggaaatgaccacaaaacaggaaaacaagcgccccagtcctcggaaa
gtgccgtcagatcctctgctgcccctcgatgaagaggctgtggatatggattatggggat
atgacagtagatggagagcaagaagaagtttctggtgatatggagatctcctttcatctc
gattcaagtcataagaccagtagcagagtaaactctgctgcaaagctagacgatggggga
gtgagaaaaagcaaatcagggaaacaacacgaaagagacggtttccggaaggccaagcaa
aagctgggcttctccacctcggaaccggagcggatgtttgttgaactgtccaacagcagc
tggtcagaaatgtccctgtgggtgattggctctaattacacactttaccccttgactcct
gccatagagcagaggctgattcttcagtacctgactcccttgggggagtaccaagagctg
ctacccatctttatgcaactggggtcaagggagctgatgatgtactacattgatttgaag
agaaccaatgatgtgctgctcacttttgaagcccttaagcatttggcatcattgctgctg
cacaacaagtttgctacggagtttgttgctcatggaggagtgcaaaagttgctggagatt
cctcgtccttctatggcagcaacaggagtgtccatgtgtttgtattacttgtcgtacaat
caagatgctatggagagggtgtgcatgcacccccataatgtgctttcagatgtggtgaac
tacaccttgtggctgatggagtgctcccatgcctcaggctgctgccatgccaccatgttc
ttctccatttgcttctctttccgtgctgtcctggagctctttgacaggcacgacgggctg
cgacgtctggttaacctgataagcactctggagatcctaaacctggaggaccaaggagcc
ctcctgagcgatgatgagatctttgccagtcgccagacggggaagcacacatgcatggcc
ctgcgccgctacttcgaggctcaccttgccatcaaactggagcaggtgaagcagtcgctg
cagcgcaccgagggcggcatcctggtccatcctcagcccccctacaaggcgtgctcctat
acccacgagcagattgtggagatgatggagttcctgattgagtatgggccagcacagctc
tactgggagccagcagaggtttttctcaagttgtcttgtgtccagctcatgcttcagctc
atttccattgcctgcaactggaagacgtactatgcaaggaatgacacagtacgatatgct
ttggatgtactggccatcctgactgtagttcctaaaatccagttgcaactggcagaacct
gtggatgtgttagatgaagctggatccactgtttccactgtgggtattagtatcatcctt
ggagttgctgagggcgagtttttcatccatgatgctgagattcagaaatcagcccttcag
atcatcatcaactgcgtgtgtggcccagataaccggatctccagcatcgggaaattcatc
tccggcactcctcgtcgaaagcttcctcaggcccccaagagcagcgagcacacgttggcc
aagatgtggaacgtggtgcagtccaacaacggcatcaaggtgctgctgtcattgctgtct
gtgaagatgccgatcactgatgccgatcagatccgggcgctggcctgcaaagcgctggtg
gggctctcgcgcagcagcaccgtccggcagatcatcagcaaactgcccctgttcagcagc
tgtcagatccagcagctgatgaaggagccggtgctgcaggacaagcgcagcgagcacgtg
aagttctgcaaatacgccgccgagctcatcgagcgcgtctcggggaagcccctgctcatc
ggcacggacgtctcgctggcgcggctgcagaaggcggacgtggtggcccagtcgaggatc
acctttcctgagaaggagctgctgctgctgattcggaaccacctcatctctaagggcctc
ggggaaacggcgtctgtccttaccaaagaggccgacctgcccatgactgcggcgtctcac
tcttctgccttcacccctgtcgcggctgccgcctctccggtgactctgccccgcactcct
cgcatggctaacggcatctcggcccgtttgagtagccatgctgccgtaggttccgctgcc
acctctgtccacgctcaggcaaggccgtctgcgtcccaaggtccacccgcccttccaggc
ccttcttacgccagcaactctcctctgattggcaggattagctttgtcagggagaggccg
tctccctgcaacggcaggaaaatcagagtgttgcgacaaaaatcggaccatggcgcttac
agccagagcccagctatcaaaaagcagctggacagacaccttccttccccacccacgctg
gacagtataatcacagagtaccttagggagcagcatgcccgctgcaagaaccctgttgcc
acctgtccccctttctctctctttactccccaccagtgtcctgagccaaaacagaggcgc
caggcgcccagtaactttacctcacggctgacccgcagggcggcctttccgaagtacgga
ggggtggatggtggctgctttgatagacaccttatatttagcaggttccgtccaatttct
gtgttcagggaagcaaatgaggatgagagtggctttacctgttgtgcattttctgcgaga
gaacgattcttaatgctgggtacttgcacggggcagctgaaactctataatgtgttcagt
ggacaggaagaggccagttacaactgccataactcggccatcacgcaccttgagccatcc
agggatggatctttattgctgacatctgctacgtggagccaacctctgtctgcgttgtgg
ggaatgaagtctgtctttgatatgaagcattccttcccggatgaccactatgtggagttc
agcaagcactctcaggacagggtcattggcacaaagggagatattgcacatatctatgat
attcagactggcaacaagctattgactctgtttaacccagatcttgccaacaactacaag
aagaactgtgccacttttaaccccactgatgaccttgtcctaaacgatggtgtcctctgg
gatgtcagatcagcacaagccatccacaagtttgacaaattcaacatgactatcagtggt
gttttccatcccaatgggctggaggtcatagtcaacactgaaatttgggacctccgaact
ttccatttgttacacacagtacctgcactggatcagtgtcgtgtggtcttcaactatact
ggcacggtgatgtatggagctatgttgcaggcagatgatgaggatgaccttctggaggaa
agaatgagaagtccctttggctcttctttcaggacatttaatgcaactgattataaacct
atagctaccatagatgtaaagcggaatatctttgacttgtgcacagacagcaaggactgc
tatctggctgtcattgagaaccagggcagcatggatgccatgaacatggacacggtgtgc
aggctctatgaagtgggccgccagcggctggcagaagatgaggaggatgaagaagaagat
caggaggaagaggagcaagaggaagaagatgatgatgaagatgatgatgacacagatgac
cttgatgaattagatacagaccagctgctggaggctgagctggaggaggatgagaacaac
gagaatgctggtgaggatggagaaaatgacttttctccctccgatgatgaggagattgcc
aacctcctggaagagggagatgagggtgaagatgaagattctgatgctgatgaggaagtt
gagctgattcttggagataccgacagctcggataactctgacctggaggacgacatcatc
ctgtccctgaatgagtga
DBGET
integrated database retrieval system
