Hirundo rustica (Barn swallow): 120758604
Help
Entry
120758604 CDS
T09369
Symbol
NEDD4
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4 isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04120
Ubiquitin mediated proteolysis
hrt04144
Endocytosis
hrt04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120758604 (NEDD4)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120758604 (NEDD4)
09144 Cellular community - eukaryotes
04530 Tight junction
120758604 (NEDD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120758604 (NEDD4)
04121 Ubiquitin system [BR:
hrt04121
]
120758604 (NEDD4)
03029 Mitochondrial biogenesis [BR:
hrt03029
]
120758604 (NEDD4)
Enzymes [BR:
hrt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120758604 (NEDD4)
Membrane trafficking [BR:
hrt04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
120758604 (NEDD4)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
HECT type E3
120758604 (NEDD4)
Mitochondrial biogenesis [BR:
hrt03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
120758604 (NEDD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
120758604
NCBI-ProteinID:
XP_039932972
LinkDB
All DBs
Position
13:7200323..7249357
Genome browser
AA seq
1307 aa
AA seq
DB search
MARRLRLHFATQRSNTDPLSETSEDFLDSNNCMYFKKSQGSAPSITQVKLTPRQAAYAPV
VQQVINQEKSTTVSSLQIKKSSSLHISLQSRKQSGCSHFGDAVAAGEDTSFLGIGSEGSC
GTGTVADHRSNDSFLSNAALGRGSLSSIAASDSGSFSSAGSDYGSCASTTSDGGSYSNSV
ISDSGTLWTSDSTFCSSVAHGDSSYRSTANKCNPSRSNSSQETLYRGNTTFDQDALSVRK
KTKIPLRRCSSLVIFPRSPSSTPPASPVNSGQLPHRGTYQTSHKLIISPSELAQKEDRTI
SKGFLSTAVNGLRLSKTACSSGEVRDVRPLYLNASLQDKSQILNGPQQATCEEVPDGFSC
VSVHLTQRPFASNSEVVKRSCSPELNLNSGAKCPHLKLERSTSACLPSKPDSEYQISINE
LGRPNAQMNKTQHILQRSVSLEGSRQKVSCCLSSLKYKCHSARTSQLHIQFKAGNEGKTT
GVRKRYGTSKREMPGTLWRPHKTRDDFLGQVDIPLYQLPTENPSMERPYTFKDFVLHPRS
HKSRVKGHLRLKMTYLPKNNGSEEETTEQAEELEPGWIILDQPEAASQPQQQQQESPPLP
PGWEERQDILGRTYYVNHEFRRTQWKRPTAQDSVAVADLGSVQLEAQHVFTHRRQISEDT
ENTDNRDSPESWEIITEDEATMYSSQNVPVPLSQSSCDIQSHLAEELSNRLTTSGTPATG
QSIAYTSHSSRRGSLQTYRLEEQPAHPVLLPTSSGLPPGWEERQDEKGRSYYIDHNSRTT
TWIKPVVQIAVEPSQVSAAQSISTGRQPQATSSDSSQQSSQQQPEMEQGFLPKGWEVRHA
PNGRPFFIDHNTKTTTWEDPRLKIPAHPRRKTSLDPVDLGPLPPGWEERTHTDGRIFFIN
HNTKRTQWEDPRLQNVAITGPAVPYSRDYKRKYEFFRKKLKKQSDIPNRFEMKIHRTTIL
EDSYRRIIAVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT
DNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDAFFIRPFYKMMLQKPITLHD
MESVDSEYYNSLRWILENDPTELDLRFIVDEELFGQTHQHELKSGGSEIVVTNKNKRDYI
HLVIQWRFVSRVQKQMTAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVADWKLHTK
YKNGYNINHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTVE
QWGTPEKLPRAHTCFNRLDLPPYDSFEDLWDKLLLAIENTQGFDGVD
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcacgccgcttaagattgcattttgctacccaaagaagcaacacagatccgttatca
gaaacctctgaagattttttggatagtaataattgtatgtacttcaaaaaatctcagggt
tctgcacctagcattacacaagtgaaactaactcctagacaagctgcttatgcacctgta
gtgcaacaagtaattaatcaagagaaaagcacaactgtttcttcactgcaaataaaaaag
agcagttctctgcacatttccttgcagtctaggaagcagagtggatgttctcattttggt
gatgctgtggctgctggtgaagacacttcattccttggtattggtagtgaagggagctgt
ggcactggaactgtggctgatcatcgatctaatgacagctttctgagcaatgctgctctg
ggcagaggcagcctcagcagcattgcagctagtgacagtggctcgttcagcagtgctggc
agtgactatggatcatgtgcaagtaccacaagtgatggaggttcatatagtaacagtgtc
atcagtgacagtggcactctttggacaagtgacagtactttctgtagtagtgttgcacat
ggtgactcttcgtatagaagcactgcaaacaaatgtaatccctccaggagcaactcatct
caggaaacactgtatagaggtaatactacttttgaccaagatgctttgtcagtgaggaag
aagactaaaattccattgcgacgttgttcatcactggttatttttcctaggagtccttcc
agtactcctccagcttctccagtaaactcaggtcagctaccacacagaggcacctatcaa
acatctcataaattaattatttctcctagtgagctggcacaaaaggaagatcggaccatt
tccaagggattcctttcaacagcggtcaatggacttagactttctaaaacggcttgctct
tccggcgaggtcagagatgtccgaccgctttatttgaatgcatcattacaggataaaagt
caaattttgaatggtcctcagcaggcaacctgtgaagaagtacctgatggcttctcatgt
gtttcagttcatcttacacaaagaccatttgcatcaaacagtgaagtggttaaacgctct
tgcagtccagagttaaatctgaattctggtgcaaaatgccctcatttaaaactggagcgt
agcacatctgcatgtctgccctcaaaaccagattcagaatatcagatcagtataaatgaa
ctaggaagaccgaatgcacagatgaacaaaactcagcatattttgcaaagaagtgtttcc
ttggaaggatcacgtcaaaaagtctcttgctgcttatccagccttaaatacaagtgtcac
agtgcaaggacgtctcagttgcacatacagttcaaagctgggaatgaaggaaaaacaact
ggtgttaggaagagatatggaacctctaaaagggaaatgcctggcactttgtggaggccc
cataagacacgagatgattttcttggacaagtggatattcctctttatcagttaccgaca
gaaaatccaagtatggagagaccatatacatttaaggattttgttcttcatccaagaagc
cataaatcaagagttaaaggccaccttagattaaaaatgacctacttacctaaaaacaat
ggatctgaagaagaaaccacagagcaggctgaagaattagagcctggatggattatattg
gaccaaccagaggctgctagccagccacaacagcagcagcaggaatctcctccactgccc
ccaggctgggaggaaagacaggacatcctcggcaggacctactatgtcaatcatgaattc
agaagaacacagtggaaaagaccgactgcacaggacagcgtggctgttgcagatcttggc
agtgtgcagctggaggcccagcacgtgttcactcaccggcgacagatatcagaggataca
gaaaacacagacaacagagattcccccgagagctgggaaattataactgaagatgaggca
acaatgtacagcagtcagaacgttccagtacctctctcgcagagtagctgtgatatacag
agtcatcttgcagaagaattgagtaacagacttactacctctggaactccagctactggc
cagtcaatagcctacactagccattccagcagaagaggtagtctgcaaacatacagactt
gaagagcagcctgcacatccagtgttactgcctacttcatctggattacccccaggctgg
gaagaacgacaagatgaaaaaggaaggtcatattatatagatcacaattctagaaccact
acctggataaaaccagttgtacagattgctgtggaaccaagtcaagtgtcagctgcacaa
agtatttctacaggaagacagccacaagcaacatcaagtgattcatcacaacagtcttct
cagcagcagcctgaaatggagcaaggatttctccctaaaggctgggaagtccgacatgca
cccaatgggagaccattctttattgaccacaatactaaaaccacaacatgggaagatcca
agactgaaaattcctgctcatccgaggaggaagacttccctagatccagttgacctgggc
ccgttaccaccagggtgggaagagagaactcacacagatggaagaatattcttcataaac
cacaatacgaagagaacacaatgggaggatcctcgactgcagaatgtggcaataactgga
ccagctgtgccttactccagggactataagcggaagtatgaattcttcagaaagaaattg
aagaaacagagtgatattccaaatagatttgaaatgaaaattcatcgcacaacaatcctt
gaagattcttacagaagaattatagctgtaaagagagcagatttccttaaagcaagactt
tggattgaatttgatggtgaaaaaggtttagactacggaggagtggccagagaatggttc
ttccttctctctaaagaaatgtttaatccttattatggattgtttgaatattcagctaca
gataactatactctgcagatcaatccgaactctggactctgcaatgaagatcatctctct
tatttcaagtttataggtcgtgtggctggaatggctgtttaccatggcaaacttttggat
gccttttttattcgtcctttttacaagatgatgctccaaaaaccaataacactacatgat
atggagtccgtggatagtgaatattacaattctctgagatggattcttgaaaatgatcca
acagaactggacctcagattcatagttgatgaagaactttttggtcagacccatcaacat
gaactgaaaagtggtggatcagaaatcgttgtcaccaacaagaacaagagagactacatt
catcttgtaattcagtggagatttgtgagccgagtgcagaaacaaatgacagcctttaaa
gagggcttttttgaactaataccacaggatctgattaaaatttttgatgaaaatgagcta
gagttattaatgtgtggattgggagatgtggacgtggctgattggaaactgcacacaaaa
tacaaaaatggatacaacataaaccatcaagtaatacagtggttctggaaggcagtctta
atgatggactctgaaaagagaataagattgcttcagtttgttactggcacatcacgtgtt
cccatgaatgggtttgctgagctgtatggttcaaatggaccacagttgttcacagtcgaa
cagtggggtacccctgaaaaactgccaagagctcatacctgctttaatcggttggatttg
cctccatatgactcgtttgaagatttatgggataaacttcttctagcgattgaaaacact
cagggttttgatggggtcgattga
DBGET
integrated database retrieval system
