Hirundo rustica (Barn swallow): 120758965
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Entry
120758965 CDS
T09369
Symbol
MEX3B
Name
(RefSeq) RNA-binding protein MEX3B isoform X1
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120758965 (MEX3B)
04121 Ubiquitin system [BR:
hrt04121
]
120758965 (MEX3B)
Enzymes [BR:
hrt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120758965 (MEX3B)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120758965 (MEX3B)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120758965 (MEX3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
zf-C3HC4
RING_XB3-XBAT31
KH_2
Prok-RING_4
KH_DEAH11_2nd
zf-RING_UBOX
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120758965
NCBI-ProteinID:
XP_039933702
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All DBs
Position
13:11276517..11280072
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AA seq
557 aa
AA seq
DB search
MPSSLFADMERNGSGGGGGGGGGGGGETLDDQRALQIALDQLSLLGLDNDETGSIYDNEP
RKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPLFVVTGRKED
VAMARREIISAAEHFSMIRASRNKNTALNGTVPGPPNLPGQTTIQVRVPYRVVGLVVGPK
GATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAMRTGGIIELTDEN
DFHANGTDVGFELNGTGSLWSKPTPPSITPTPGRKPFCNYRNDSSSSLGSASTDSYFGGG
TGGGGSARLADYSPPSPALSFSHNGNNNNNSANGYVYGGGGGDVLSSPDCCSELPFDSPP
GFDLAPAPPPGAALLWPQFERGPAAPPSPAPSPAAAAAFPGAAPANANLALLVSGPRRGA
APPPARLSPPLHGSAAGTEHPLARRVRSDPGGRLLAASYPLYANGLGAHLPGLPSDSSAS
SSSSSSSSSSSSCSSSGVRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKTEP
QCPVCHSAVTQAIRIFS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctcgctttttgcagacatggagaggaacgggagcggcggcggcggcggtggt
ggtggtggtggcgggggagagaccctggatgaccaaagagcccttcagatcgccctggat
cagctctccttgctggggctggacaacgacgagacgggctccatttacgacaacgagcct
cggaaaaagagcgtgaacatgactgaatgcgtcccggtgcccagctcggaacatgtcgct
gagatagtggggagacaaggttgtaaaatcaaagctctgcgggcaaagaccaacacctac
atcaagaccccggttcgcggggaggagccgctctttgttgtgacgggcagaaaggaagat
gtggccatggcccgcagggagatcatctctgcggccgagcacttctccatgatccgagcc
tcgcggaacaagaacacggccctgaacggcaccgttcccggccccccgaacctgcccggc
caaaccaccatccaggtgcgggtgccttatcgcgtggtgggcttggtcgtggggcctaag
ggggccaccatcaagcgcatccagcaacagacgcacacgtacatcgtgaccccgagccgg
gacaaggagccggtctttgaggtgaccggcatgccagagaacgtggaccgggcccgggag
gagatcgaggcgcacatcgccatgcgcaccggcggcatcatcgagctgacggacgagaac
gacttccacgccaacggcacggacgtgggcttcgagctgaacggcacgggcagcctctgg
agcaagcccacgccgcccagcatcacacccaccccgggccgcaagcccttctgcaactac
cgcaacgacagctccagctcgctgggcagcgcctccaccgactcctacttcgggggcggc
accggggggggcggcagcgcccgcctggccgactacagccccccgagcccggcgctgagc
ttctcgcacaacggcaacaacaacaacaacagcgccaacggctacgtgtacggcgggggc
ggcggcgacgtcctctcctccccggactgctgctccgagctgcccttcgactcgccgccc
ggcttcgacctggcgcccgccccgccgcccggggccgccctcctctggccgcagttcgag
cgcggccccgccgctccgccctcgcccgctccctcgcccgccgccgccgccgccttcccg
ggcgccgcgcccgccaatgccaacctggcgctgctggtgagcggcccccggcgcggcgcc
gccccgcccccggcgcggctctccccgcccctgcacggcagcgcggccggcaccgagcac
ccgctggcgcggcgggtgcgcagcgaccccggcgggcggctgctggccgcctcctacccg
ctgtacgccaacgggctgggcgcccacctgcccgggctgccctccgactcgtccgcctcg
tcctcctcctcctccagctcctcgtccagctcctcctgctcctcctccggcgtgcggcgg
aagggcagccgcgactgctcggtgtgcttcgagagcgaggtgatcgcggcgctggtgccc
tgcggccacaacctcttctgcatggagtgcgccaaccgcatctgcgagaagacggagccg
cagtgccccgtgtgccacagcgccgtcacccaggccatccgcatcttctcctga
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