Hirundo rustica (Barn swallow): 120759118
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Entry
120759118 CDS
T09369
Symbol
PCDH12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hrt04515
]
120759118 (PCDH12)
Cell adhesion molecules [BR:
hrt04515
]
Cadherins
Protocadherins
120759118 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
120759118
NCBI-ProteinID:
XP_039934008
LinkDB
All DBs
Position
14:complement(16845498..16857077)
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AA seq
1177 aa
AA seq
DB search
MPRRCGGPEDSPGMRWRAGQPMAARRGRGGSASGVLGLSRSALRLPALWWWYLFLSADAQ
EVATFTVRYRVLEEVPPGTVIGSLAEHFEGGESGEAAETFQLMETPGRFPLHVGSGDGVL
STAGRVDREQLCRHSDPCWVSFDVLAAQNPALIHVEVQVMDVNDNAPRFPTPELELEISE
SASLRTRIPLDRALDADAGPNALCSYALSPSEHFALEVVSSSDGTRHAELIVVKEVDREQ
HSSFDLVLTATDHGEPPKSGTALIKVIVLDSNDNSPVFAQSSLTVEVQEDARPGTLLVTV
TATDPDQGPNGEIEYSLSRHAPPEVLSTFSINARTGSVFLRLPLDYEETHAYELDVQARD
LGANPIPAHCKVLVKVLDVNDNAPDVHVTWAARVPVLSEALPKDSFVALVTASDPDSGSN
GQVLCSLSQGSEHFRLKRTNSHSFALLTNASLDRERRAEYNLTLVVRDMGALSLAVLKHL
TICISDVNDNAPAFEKAAYEAAVAENSEAPAFLLTVRATDPDLGFNGKVTYRILDPSALG
LVSVDPITGDIFALQAFDYEQVKSLEFLVTAEDGGHPKLASNISIRLAVLDRNDNAPIIT
APVLVGGVATLSVLVNVDTGCCWVVPGNGSTQGAAAVTNSTLVSCPGSPFLFTIVARDAD
SGINGALRYDLVGGDDARLFILDPLLGQVSLNASNASSLAGSQRELLVRVSDQGDTPLHT
LARLRLLFRRHGAFSKMSAQDPGWPSLSVVLLICLAALLGGCLLLLALTLSLRKKDKKDG
MAYNCRQAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPREPEPPRPCQEEPPGTATPQA
PLHLTPTLYRTLRNQRTQKDSEEQQGALELPVLQRRPCQPHRAKHPAKEAAGPPEAPPHN
RSSAKPPTGEPQVPPEQPAGAGGAGQPQPHQQILRSLVRLSLVALAEQSPTGEFAMESAP
VQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSRAAGLDTGLDTGLDTGLDTDCLSTKDS
GHGESEAGDRDCDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPAWVARLSLPLTS
SYKDNIFSPDSPRSPEDEEAARQEKPRTFETFGKGAGAEAGGSGTRLASTFLSEMSTLFE
MILSQKAQVHSEAGAGLLRQLSARGRSLGLGDAAAAL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggcgctgcggtggccctgaggactctccggggatgcggtggcgggcgggacag
cccatggcagcgcggcggggccgcgggggctctgccagcggcgtgctggggctgagccgc
tcggcgctgcggctgccggcgctgtggtggtggtacctgttcctgagcgccgatgcccag
gaggtggccacgttcacggtgcggtaccgggtgctggaggaggtgcccccgggaactgtc
atagggagcctggccgagcacttcgagggcggcgagagcggcgaggcggccgagaccttc
cagctgatggagacccccgggaggttcccgctgcacgtgggcagcggggacggggtgctc
agcacggccgggcgcgtggacagggagcagctgtgccgccacagtgatccctgctgggtg
tccttcgacgtgctggccgcccagaacccggccctgatccacgtggaggttcaggtgatg
gacgtcaacgacaacgcgccgcggttccccacgcccgagctggagctggagatctcagag
agcgcgtccctgcggacacggatcccgctggatcgagccctggatgctgatgctggcccc
aacgccctctgctcctacgccctctcccccagcgagcactttgccctggaggtcgtctcc
agctccgatgggacgaggcacgcggagctcatcgtggtgaaggaagtggaccgggagcag
cactcctcctttgacctcgtgctgacggccactgaccacggggagccaccaaaatcaggt
actgctctgattaaagtcattgtcctcgactccaatgacaacagccccgtgtttgcacag
agttccctgacggtggaggttcaggaggacgcccggcccgggaccctcctggtgacggtc
acggccaccgaccccgaccagggtcccaacggggagatcgagtacagcctgagcaggcac
gcgccccccgaggtgctcagcaccttcagcatcaacgcccgcacaggcagcgtcttcctg
aggctccctctagactacgaggagacccacgcctacgagctggacgtgcaggcgcgggac
ctgggcgccaaccccatcccggcgcactgcaaggtcctggtcaaggtcctggatgtcaat
gacaacgctcccgacgtccacgtcacctgggccgcgcgggtgcccgtgctgtccgaggcc
ctgcccaaggacagcttcgtggccctggtgacggccagcgaccccgactcggggagcaac
gggcaagtgctctgctccctcagccagggctccgagcacttcaggctgaagaggaccaac
agccacagcttcgcgctgctgaccaacgcctcgctggaccgcgagcggcgcgccgagtac
aacctgacgctggtggtgcgcgacatgggggccctgtcgctggccgtgctgaaacacctc
accatctgcatcagcgacgtcaacgacaacgccccagccttcgagaaggctgcctacgag
gctgctgttgctgagaacagcgaagcaccagccttcctgctcaccgtccgtgccaccgac
cccgacctgggcttcaacgggaaagtcacctacaggatcctggacccctctgctttgggg
ttggtctcagtcgaccccatcactggggatatttttgccctccaagcttttgattacgag
caggtgaagagcctggagttcctggtgacagcagaggacggtgggcatcccaagctggca
tccaacatttccatcaggctggctgtgcttgaccggaacgacaacgcgcccatcatcacc
gcaccagtgctggtgggaggggtggccacgctctccgtcctggtcaacgtagacactggg
tgctgctgggtggtccccgggaacgggagcacgcagggggctgcggcagtgaccaattcc
acactcgtgtcgtgccctggcagtcccttcctcttcaccatcgtggccagggatgcggac
tccggcatcaacggggctctccggtatgatctggtgggtggcgatgatgccaggctcttc
atcctggaccccctcctggggcaggtgtccctcaacgccagcaatgccagcagcctggcc
ggcagccagcgggagctgctggtgcgggtgagcgaccagggggacaccccgctgcacacc
ctggcccggctccgcttgcttttccggcgtcacggggccttctccaagatgtcagcacag
gatcccggctggcccagcctctccgtggtgctgctgatctgcctggccgctctcctgggc
ggctgcctgctgctgctggcgctgaccctgtccctgcgcaagaaggacaagaaggacggc
atggcctacaactgccggcaggccgaggacgcccgcaggcagcagcagctcaagaagccg
cacaggcagatccagaaggccgacatccacctggtgccgctgctgcggggccgcccccgg
gagcccgagcccccccggccctgccaggaggagccgccgggcacggccaccccacaggct
cccctccacctcacccccactctctacaggaccctgagaaaccagaggacacaaaaagac
tcggaggagcagcagggcgccttggagctgcccgtcctgcagcgccggccctgccagccc
cacagagccaagcacccggccaaggaggccgcgggcccgccggaggcgccgccgcacaac
aggagctcggcgaagccccccacgggagagccccaggtgccgcccgagcagcccgcgggg
gcggggggagccgggcagccccagccccaccagcagatcctcaggagcctggtccggctg
tcgctggtggccctggcagagcagagcccgaccggggagttcgccatggagtcggcccca
gtgcagcaaatctcccagctgctctccctgctgcaccagggccaattccagcccaaaaca
aactacaggggaaacaagtacacggccaagaacggcagcagggctgcagggctggacacg
gggctggacacggggctggacacggggctggacacggactgcctgagcaccaaggacagc
gggcacggcgagagcgaggccggggaccgcgactgcgacagcgccttcgagctctccgtg
cagcagcttgtgggagaggagctggagaccctcctggagccacaggcagagctggccctc
aagaggctgacagccgcagacccggcgtgggtggcccggctgtccctgcccctcaccagc
agctacaaggacaacatcttctcccccgactcgccgcgctcccccgaggacgaggaagcc
gcgaggcaggagaaaccaaggacctttgagacctttggcaaaggcgccggggctgaggcc
ggcggcagcgggacgaggctggccagcaccttcctgtcggagatgagcaccctgtttgag
atgatcctgtcccagaaggcgcaggtgcacagcgaggcgggcgcggggctgctgcggcag
ctgtcggcccgcgggcgcagcctcggcctgggggacgctgctgcggcgctctag
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