Hirundo rustica (Barn swallow): 120759157
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Entry
120759157 CDS
T09369
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120759157 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120759157 (DDX46)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120759157 (DDX46)
Spliceosome [BR:
hrt03041
]
Complex A
U2 snRNP components
U2 related factors
120759157 (DDX46)
Complex B
120759157 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
120759157
NCBI-ProteinID:
XP_039934085
LinkDB
All DBs
Position
14:complement(9425647..9443719)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TEGVEVSKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKASAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIIDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGNPIPTDLEKLWADFKDQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcattatcggaagcgctctgcatcccggggacgctccgggagc
cgttccaggagtcgttctccatcggacaagaggaaacgtgaggacaggcgctccaggagc
cgggatcgggatcgcagacgggagaggtcgcgcagcagggacaagaggaggtctcgctcg
cgggacagaaagcgtcaaagacgttcgaggagtagagaaagggaacggagccgagagaga
agacgatcccggagccgagagaggaggcgctcgaggagtaggagtagagggagacggtct
cgatcctccagtccaagcaagaacaggaaaacagaaaacagatcaagatctaaggaaaag
acagaaggtgtggaagtttccaaagaaaagaaaaaagacaaagatgacaaagaggaagag
aaggataaagatgctactacaaatgctgtggccactgagaattttgatcagaacaaacta
gaagaagaaatgagaaaaagaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggcaatggaaaacataggagagctgaaaaaagaaattgaagagatgaaacaggggaaa
aaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaaaaagaa
ggcaatgaggttgaagatgaggagttagatcctttagatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaaaggtggaggtgggagtgaaaagaaa
actggaccaactgttaccaaggtggtaactgtggtgacaaccaaaaaggcatctgctgag
tctgaaaagaagaaaggggaactcatggagaatgaccaagatgcaatggagtattcctca
gaagaggaggaagttgatcttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaagatagaatatgaacctttcaggaaaaacttctat
gttgaagtaccagaactagctaaaatgactcaagaagaggtgaatgtgtacaggctggaa
ctggagggaattacagtcaagggaaaaggctgtcccaaaccgataaaaacctgggtacaa
tgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaagcccact
ccgattcaaactcaggctatcccagcaattatgaatggacgagatttgattggcattgct
aaaacaggaagtggaaaaactattgcatttctgttgcctatgttcagacacatcatggat
cagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctacacgtgag
ttggctttgcagattaccaaggagtgcaagaaattctcaaagacacttgggcttcgagtt
gtctgtgtttatggaggaacaggaatcagtgaacagatagctgagctcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgg
gtgacaaatctccgtagagtcacgtacgttgtacttgatgaagctgacagaatgtttgac
atggggtttgagcctcaggtaatgcgcattatagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctactttccccagagctatggaggccctggcccgcaggatcctcagt
aaacctatagaggtgcaggttggaggcagaagtgttgtctgttctgatgtggagcaacac
gtgattgtcatagaagaggagaacaagtttctgaagttactggagctactgggacattat
caggagaaaggatccgttatcatatttgtagataagcaagaacacgctgatgggttgttg
aaagatttaatgagggcttcttatccttgcttgtctcttcatggaggtattgatcagtat
gacagggacagcatcattaatgacttcaagaatggaacctgcaaacttctggtggccaca
tctgtagcagcacggggcttggatgtgaagcagctgatgctggtggtcaattacagctgt
cccaaccattatgaggactatgtgcaccgagcaggccgcactgggcgagctggcaataaa
gggtatgcatatacattcattactgaggatcaagcacgttatgctggtgatatcattaag
gctttggaattgtctgggaatccaattcctactgatttggagaagctctgggctgacttc
aaagaccaacagaaggctgagggaaagttgattaaaaaaagtagtggattctctggcaaa
ggctttaaatttgatgaaacagaacaggctttggccaatgaaagaaagaagctacagaaa
gcagctcttggcttgcaagattcagatgatgaagacacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagacatggcagcaccaggaacatca
aatgctcctacaccatcagctgggaatgcagaaaaattggaaattgccaaaagattggct
ttgagaatcaatgcccagaagaatcttggagcagaggcacaagtcatggttcctttccac
tttaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaattcaagca
cctactgtgtctgccaagaccattgcagagcaactggctgaaaaaatcaatgccaagctc
aattatgtacccatagagaagcaggaggaagagaaacaggatggaggacagaatgaatcc
ttcaagagatatgaagaggaattagagatcaatgacttcccacagactgccagatggaaa
gttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgccattacaatc
aggggaacttacttccctccaggcaaagaacccaaggaaggagaacggaagatttatttg
gctatagaaagtgccaatgaattggctgtacagaaagcaaaggcagaaatcactcgcctt
ataaaagaggagctcatcagattgcaaaattcttatcaaccaaccaacaaaggaagatac
aaagttctatga
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