Hirundo rustica (Barn swallow): 120759492
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Entry
120759492 CDS
T09369
Symbol
CACNA1H
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04010
MAPK signaling pathway
hrt04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120759492 (CACNA1H)
04020 Calcium signaling pathway
120759492 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hrt04040
]
120759492 (CACNA1H)
Ion channels [BR:
hrt04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120759492 (CACNA1H)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120759492
NCBI-ProteinID:
XP_039934732
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All DBs
Position
15:complement(14421750..14532317)
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AA seq
2179 aa
AA seq
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MRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDRNFAMTYNLTFL
HPYYRPDEAEENPFICSSHRENGMQRCSNIPSRKESKVECTLGMDSYSPGLAGAEAGRNS
CINWNQYYNVCMAGDLNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNF
IYFILLIIVGSFFMINLCLVVIATQFSETKQRENQLMQEQRARYLSNDSTIASFSEPGSC
YEELLKYICHIFRKVKRRTLRLYNNWQSKRRKKVNPNSGGGGGQSQRGRRRITSIHHLIH
HHHHHHHHHYHISNGSPRGPRAHPELCQLELQLVKPGQQLMLPAPAAPRADAGAVHSIYH
ADCHVEGPPGACKATGATKGAGLGGHGGMNYPTILPSPGGKGGSAAPSKGKRNGNSPVAV
ANSPGSLGLDSYGKLQQLVGEHGLRRTPSRLSGLSAAGALPGSRLSCELQDCPFCASLLD
DPDLALSDSDSHGDSDSNGVYEFTQDLRHGDHRDQLQQQQQRGRRRRKKKKAKERNKVTK
LWKAFSAKLKRIVESKYFNRGIMIAILINTLSMGIEYHEQPDELTNALEISNIVFTSMFA
LEMLLKLLAFGIFGYIKNPYNIFDGIIVVISVWEIIGSRTGGLSVLRTFRLLRVLKLVRF
MPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKXQLKTDTGDTVPDRRXF
DSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEG
FQAEGDANRSDTDEDKTSANFEDEFEKLKDLRATEMKMYSLAVTPNGHLEGRGAAPPPII
MRTAATPMPTPKCSPHLDSLHALGDSRRGSNASLDPTGYDQKSLSSLRSSPCANWGTGSN
WGSRRSSWNSWARAPSLKKKNQSGXVTGIAAVGEGKGQQDDDSDDAKSSTLSRPSLPRRA
ESLDYRGSQELPELLQVPSVRQLGLGPAALLPAEFHDCNGKTGHGPAEFFLRVDGHKEDG
LDYEDDMEDSCCYRIRKALEPYKPQWCKTHEDWSLYLFSPQNRFRATCQKVIAHKMFDHV
VLVFIFLNCITIALERPDIDPLSTERIFLSVSNYIFTAIFVAEMMVKVVALGFFSGENTY
LQSSWNVLDGVLVFVSIIDIIVSMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLV
VETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCDGPDVKNITTKADCTNAHYR
WVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPIQNHNPWMLLYFISFL
LIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRRPYYADYSP
ARRSIHSLCTSHYLDLFITFIIGVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAL
LKLVAFGFRRFFKDRWNQLDLAIVLLSIVGITLEEIEMNAALPINPTIIRIMRVLRIARV
LKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLDCSEENPCEGL
SRHATFTNFGMAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSYLPVISPVYFVTFVL
IAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIELEMSKGSNTASGSRSGAAESRALH
GKQEHAKGKHQALGSAASLRPQDSQNLLTVRKISVSRMHSLPNDSYMFRPVTPAKAPLPL
HEVEMETYPCKAQRGSITSIRSQPVGTSSWLRVPPESLPPAARCPGHEGRHRWKVLAPQG
TPRSPALSKLLCRQEAVRTDSVDGQTPERKDSLQAEPGEPQPSAKQSQSSLTPSPLHSPL
PDTPPRSPPSSPRRPLSPLARKHTCGQHGTPSRPPSPASPEGPEGCQGEPSDLADEEVRH
INSSAKDWAEESSDPGSRSTSPFTSPAPSPVPLKNCSTSSLSRKEKDLKKFYSTDAKGFL
SKPSWADEQRRHSIEICPSGGATDRGFQEPAEDKQRPLGHVQPEAEYIHGARRKKKMSPP
CISIDPPMEDDGAAAPRTKPSENTLLRRRTPSCEFPAYRESLELPESQPSCRGEHLSVPN
FSFEQLDGGSLSGLSERLDGGQPTPASADSELRKTDHLKTQRGNGERGKELLGTAKSPLR
KQDLGPVTVATEEGTEDPV
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcctggtcacgctgctgctggacactctgcctatgttaggcaacgtcctcctc
ctctgcttcttcgtcttcttcatcttcgggatcgtcggggtccagctctgggcagggctg
ctcaggaacaggtgcttcctagacaggaattttgccatgacctacaacctgaccttcctt
cacccctactaccgcccggacgaggcggaggagaaccccttcatctgctcctcgcaccgg
gagaacggcatgcagcgctgctccaacattcccagcaggaaggagtccaaggtggagtgc
acgctgggcatggactcctacagcccgggcctggccggcgccgaggccggccggaattcc
tgcatcaactggaaccagtactacaacgtctgcatggccggggacctgaacccccacaac
ggggccatcaacttcgacaacatcgggtacgcctggatcgccatttttcaggtgataacc
ctggaaggatgggtggacatcatgtattacgtgatggatgcgcactctttttacaatttt
atatattttatattgcttatcatagttggctccttcttcatgattaacctgtgcctggtg
gtgatagccacccagttctcggagaccaagcagcgggagaaccagctgatgcaggagcag
cgggcgcgctacctgtccaacgacagcaccatcgccagcttctcggagccgggcagctgc
tacgaggagctgctcaagtacatctgccacatcttcaggaaggtcaagaggaggacgctc
cgcctctacaacaactggcagagcaaacgccgcaagaaggtcaaccccaacagcggcggc
ggcggcgggcagagccagcgcggcaggaggaggatcacctccatccaccacctgatccac
caccaccaccaccaccaccaccaccactaccacatcagcaacggcagcccgcgggggcct
cgggcccaccccgagctctgccagctggagctgcagctggtgaagcccggccagcagctg
atgctccccgctcccgccgctccccgcgccgacgccggcgccgtgcacagcatctaccac
gccgactgccacgtggaggggccccccggggcgtgcaaggccaccggggccaccaaaggg
gccgggctgggcggccacggcggcatgaactaccccaccatcctgccctcccccggcggc
aagggcggctccgcggcgccgagcaaagggaagaggaacgggaattctccggtggccgtg
gcgaacagcccggggagtttggggctggattcctacgggaagctgcagcagctggtggga
gagcatggtctccgccggacgcccagccggctgtcggggctgagcgcggccggggcgctg
cccggctcccggctcagctgcgagctgcaggactgtcccttctgcgccagcctcctggac
gaccccgacttggccctcagcgactccgacagccacggcgactccgacagcaacggcgtc
tacgagttcacgcaggacctgcgccacggcgaccaccgggaccagctgcagcagcagcag
cagcggggcaggaggaggaggaagaagaagaaggccaaggagaggaacaaggtgaccaag
ctgtggaaggcattcagcgccaagctcaagaggatcgtggagagcaaatacttcaaccgc
gggatcatgatcgccatcctcatcaacaccctcagcatgggcatcgagtaccacgagcag
cccgacgagctgaccaacgccttggagatcagcaacatcgtcttcaccagcatgtttgcc
ctggagatgctcctgaagctcctggcctttggaatcttcggctacatcaagaacccctac
aacatcttcgacgggatcatcgtggtcatcagcgtgtgggagatcatcgggagtcggacg
gggggcctgtccgtgctccgcaccttccggctgctccgcgttctcaagctggtgcgcttc
atgcccgccctgcgccgccagctcgtggtgctcatgaagaccatggacaacgtggccacc
ttctgcatgctgctcatgctcttcatcttcatcttcagcatcctcggcatgcatcttttc
ggatgcaagngtcagctgaaaaccgacacgggagacaccgttccggacaggagannattt
gattccttgctttgggccattgtgaccgtgttccagatcctcacgcaggaggactggaac
gtggtgctctacaacggcatggcctccacctcctcctgggccgccctctacttcgtggcg
ctgatgaccttcggcaattacgtgctcttcaacctcctggtggccatcctggtggaaggg
ttccaggcagagggagatgccaacaggtcagacacagacgaggacaagacatctgccaac
ttcgaggacgagtttgagaagctgaaagacctcagagccacagagatgaagatgtactcg
ctggctgtcacccccaacgggcacctggagggccggggggccgcgcccccgcccatcatc
atgcgcaccgccgccaccccgatgcccaccccaaagtgctccccgcacctggactccctg
cacgccctgggggactcgaggaggggcagcaacgcctcgctggaccccacgggctacgac
cagaagtccttgtccagcctccgcagctccccctgcgccaactggggcaccggcagcaac
tggggcagccgccgctccagctggaacagctgggccagggcgcccagcctcaagaagaag
aaccagtcgggctgagtaacgggaatcgctgctgtcggagagggaaaaggccagcaggac
gacgactcggacgacgccaagtccagcacgctcagccggccctcgctgccccggcgggcg
gaatccctggattaccgcggctcccaggagctgcccgagctgctgcaggtgccctcggtg
cgccagctcgggctgggccccgccgcgctgctgcccgccgagttccacgactgcaacggc
aagacgggacacggccccgccgagttcttcctcagggtggacgggcacaaggaggacggc
ctggactatgaggatgacatggaggacagttgttgctaccggatccgcaaagccctggag
ccctacaaaccccagtggtgcaagacccacgaggactggtccctctacttgttctcccca
cagaacaggttccgagcgacgtgccagaaggtcattgcccacaaaatgtttgaccacgtg
gtgctggtctttatcttcctcaactgcatcaccatagctctggagagaccggacatcgac
cccctgagcacggaaaggatattcctaagcgtctctaattacatcttcactgccatcttc
gtggctgaaatgatggttaaggtggtggcccttggctttttctccggggagaacacgtac
ctgcagagcagctggaacgtcctggacggagtcctggtctttgtctccatcattgacatc
attgtgtccatggcatcagcaggaggagccaaaatcctgggagtccttcgtgtgctgagg
cttctgcggaccctgaggccgctccgagtcatcagcagagccccaggtctgaagctggtg
gtggaaaccttgatctcctccttgaggcctattgggaatattgttctcatctgctgtgct
ttcttcattatcttcgggattttaggggtccagctttttaaaggcaagttctactactgt
gatggccccgatgtcaaaaacatcaccacgaaggccgactgcaccaacgctcactacaga
tgggtccggaggaagtacaacttcgacaacttggggcaggccctgatgtccctgtttgtc
ctctcctccaaggacggctgggtgaacatcatgtacgacgggctggatgccgtgggcatt
gaccaacagcccatccagaaccacaacccttggatgctgctctacttcatctccttcctg
ctcatcgtcagcttcttcgtgctcaacatgttcgtgggggtggtggtggagaacttccac
aagtgccggcagcaccaggaggcggaggaggcgcggcgccgggaggagaagcggctgcgc
cgcctggagaaaaagcgcaggaaagcccagcgcaggccctactacgccgactactcaccg
gccaggagatccatccacagcctgtgcaccagccactacctcgacctcttcatcaccttc
atcatcggcgtcaacgtcatcaccatgtccatggagcactacaaccagcccaagtccctg
gatgaagccctcaagtactgcaactacgtcttcaccatcgtcttcgtgttcgaggcgctg
ctgaagttggtggcctttggtttccggaggttttttaaggacaggtggaaccagctggac
ctggccatagtcctgctgtccattgtggggatcacgctggaggagatcgagatgaacgct
gcccttcccatcaaccccaccatcatccgcatcatgagggtgctcaggatcgccagagtg
ctgaaactgctgaaaatggccacgggcatgagagctctgctggacacggtggtgcaagcc
ctgccccaggtagggaaccttggcctactttttatgctcctgttttttatctatgctgcc
ctgggagtggaattgtttggcaagctcgattgcagcgaagagaatccctgcgagggcctg
agccgccacgccaccttcaccaacttcggcatggccttcctcaccctcttcagggtgtcc
acgggggacaactggaacgggatcatgaaggacacgctccgggagtgcacccgggaggac
aagcactgcctcagctacctgcccgtcatctcccccgtctacttcgtcaccttcgtcctc
atcgcccagttcgtgctggtcaacgtggtggtggcggtgctgatgaaacacctggaggag
agcaacaaggaggccaaggaggacgcggagatggacgctgagatcgagctggagatgtcc
aaagggagcaacaccgccagcgggagcaggagcggggcggcggagagccgggcgctgcac
gggaagcaggagcacgccaaggggaagcaccaagccctgggcagcgcagcctcgctgagg
ccccaggattcccagaatctgctgacggtccggaagatctccgtgtcccggatgcactcc
ctgcccaacgacagctacatgttccggcccgtgaccccggccaaggcgccgctgccgctg
cacgaggtggagatggaaacttatccctgcaaagcccaaagaggatccatcacctccatc
cgctcccagcccgtggggacgagctcctggctgagggtgcccccggagtcgctgccgccg
gccgcgcgctgccccggccacgaagggcggcaccgctggaaggtcctggccccccagggc
accccccgatctcctgctctcagcaagctgctctgcagacaggaggccgttcggacggac
tcggtagacggacagaccccggagcgcaaagacagcctgcaagcagagcctggagagccc
caaccatcagcaaagcagtcccagagctccctcacgcccagccctctccattccccgctc
ccggacacccctccgcgctcccctccgtcctccccgcgccggcccctcagccccctggca
cggaagcacacgtgtggccagcacggcactcccagccggccacccagccccgccagcccc
gagggccccgagggctgccagggcgagccctcggacctggctgacgaggaggtccggcac
atcaacagctcggccaaagactgggcagaggagagctcggaccccggcagccgctccacc
tcgcccttcacctccccggccccgtcccccgtgcccctcaagaactgcagcacaagcagc
ctctcccgcaaggagaaggacttgaagaagttctacagcaccgacgccaagggcttcctc
agcaagcccagctgggccgacgagcagcggcggcactccatcgagatctgcccctccggc
ggcgccacggaccgcggcttccaggagccggccgaggacaagcagcgtcccctcgggcac
gtccagccggaggccgagtacatccacggagcccggaggaagaagaagatgagcccgccc
tgcatttctatagatcctcccatggaggacgacggcgcggcggccccgcgcaccaaaccc
tccgagaacaccctgctgcggaggagaacgccgtcctgcgagttcccggcctaccgagaa
tccctggagctcccggagagccagccctcgtgccgcggggagcacctcagcgtgcccaac
ttctccttcgagcagctggacggcggctccttgagcggcctctcggagcggctggacggc
ggccagcccacgccggcctccgcggactcggagctgagaaagacggatcacttaaaaact
cagcggggcaacggcgagaggggcaaagagctgctgggcaccgccaagagccccctgcgg
aagcaggacttggggcccgtgactgtcgccacagaagaaggcacggaggacccagtatag
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