Hirundo rustica (Barn swallow): 120759779
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Entry
120759779 CDS
T09369
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120759779 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120759779 (PARN)
Enzymes [BR:
hrt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120759779 (PARN)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120759779 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120759779
NCBI-ProteinID:
XP_039935322
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All DBs
Position
15:6590624..6638643
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AA seq
660 aa
AA seq
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MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEERYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDERRSQANGAGSLSYTSPNSTKCPVTIPEDQKKF
VEKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKELINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNRSLKLEKIKFSHKTIQEEIFFLHFTGASTVGKRSMSPIEEETGS
DDMEEGEGQDPENDQTDPCAESLPDGKKRAKKLKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataacctaaataaagtatatgaagccattgaa
gagtcggacttcctggccatcgatggagagttttcaggaatcagtgatgggccttcagtt
agtgcattaacaaatggctttgacactccagaggaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacacagaa
gaaaggtatataatgaagtcgtttaacttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccgtatttaaatcaggaagaagagaga
cagctaagggaacagtatgatgaaagacgttctcaagccaacggtgcaggatctctgtca
tacacttctcctaattccacgaagtgccctgtaacaattcctgaggatcagaaaaaattt
gttgagaaagtagtggaacagatagaagacctattaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgtggaaactctggagtcagataagaaggagagatatattgtt
attagtaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtagggttttccagagttgttcatgccattgctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tactgtcccctgcctgatgacctgagtgagttcaaggaagtaacctcatgtgtctttccc
cggttactggatactaaactgatggcaagtacacagccttttaaggagctcattaataat
acatcacttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgaacaactgcatgaagcagga
tatgatgcctacattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtgatggacataccatatctcaatttggaaggaccagacttg
cagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgat
ctgtaccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatca
gcatttgtatcattgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagaatatgtggagaaaaaacatgaagaaaaa
caggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagaggttaaaa
acccagtgcacaccttacgtttcccagagtcggtactactgtgttaacaggagccttaag
ttggaaaaaattaaattcagccataagaccattcaagaagagatcttcttcctacatttt
acaggtgccagtacagtgggaaagagaagcatgagtcctattgaggaagaaactggttct
gatgatatggaagagggagaaggccaagatccagaaaatgatcagacagacccctgtgca
gagtcccttccagatggtaagaagagagccaaaaagttgaaaaagatcaagacagaacaa
gttccagcgggaagcctcacaactagttccactggaatttttgaggtccctgaaacatgg
tag
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