Hirundo rustica (Barn swallow): 120759794
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Entry
120759794 CDS
T09369
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
120759794 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hrt01001
]
120759794 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hrt04054
]
120759794 (CIITA)
Enzymes [BR:
hrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120759794 (CIITA)
Protein kinases [BR:
hrt01001
]
Serine/threonine kinases: Other
TAF1 family
120759794 (CIITA)
Pattern recognition receptors [BR:
hrt04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120759794 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
NB-ARC
LRR_14
LRR_8
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
AAA
nSTAND3
AAA_19
Silic_transp
Motif
Other DBs
NCBI-GeneID:
120759794
NCBI-ProteinID:
XP_039935348
LinkDB
All DBs
Position
15:6168295..6195500
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AA seq
1114 aa
AA seq
DB search
MARQRQTMDSIFVPENGYLDLLHSDIDPLHLCTFFDSKSSGDEEGDFSTDLEVDASNYEQ
VNNVDFPYENGDGFYPCSNTMDAYAKVAELVEYVLKDQQEKQVEDIFAGDLILDDIGAEN
TEKFPDIKMQTCLKRTFLGSAAESYCDASEPKYKKIVEVPAASAGNGSFFAMPLNSHPVS
CTSLTNQHMSFSVPAAHGLERSLIIPGTXSTAMGLTSECLPASVKGYQEPAGLAGPPQQI
FNFVLENGTSDVIVYPVLTSPMETFMSPSTPVNLCDLEKFQEVQDSIISSGEPFKRPEQV
ETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDRTLVQSQTETKSGKNSAKAMEKELVTCS
LQEKEKTAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILVQKICQDWSNGEFSQFEFV
FWFDCKQISLPEKLYSLKELLLEFFVKPREGSKEIFEYMLQNPAKVLLIFDGFKGLHDHE
NFPRCSASQPEKDLCSIKELLSALIQKKILNGCTLLFTARPKDKLYQYVSKVDRTIEIVG
FSPQQRELYVTRYFEESPYCDSALKLIKECEYLFSHCYSPVMCRFVCFLCEAVLEMGEKS
LPSTLTEVFLKFFQQKIMLMQTDVTATQNQESLATLARIAWYLGEKHQSAMKSDVIPSKE
VKEFALKYGFVLPFAFPRHSDSEEEEFGSTFSDFVIQNFLCALHLLLAEELKDKNLTKYL
SFLSKKKKPYNWLDLMPRFLVGLMFLQDDPSFCSLSNEDAKQSTKKQKALMKYIRRLQIN
TLCPERLLELLCCVYETQNNYLLQHVALRLEPDLSFLGIVLTPPDVHVLLSILKRSRKEF
SLDLQNTSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLKASTEKFVLDP
FKAKTMKDISDLSDLVEMQEKMVNCVQEASGCTSYEIPAIRNLRKLEFALGPACGLQGLL
KLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKISDLGAEN
LAAALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLTDS
LRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacagagacaaaccatggattcaatatttgtgcctgaaaatggctaccttgat
ttactgcacagtgatattgatccattgcatctgtgtactttctttgattctaagtcatct
ggagatgaagaaggtgacttctctacagatcttgaagttgatgccagcaactatgaacag
gtaaataatgtggatttcccatatgaaaatggagatgggttctacccctgttccaacacc
atggatgcttatgctaaagtagctgaattagtagaatatgtgctcaaggatcagcaagag
aagcaggtcgaagacatttttgcaggggaccttatcttggatgacattggtgctgaaaac
actgagaaatttcctgacataaagatgcagacatgtcttaaacgaactttcttaggctct
gcagcagagagttactgtgatgcttctgaacccaaatataagaaaattgtggaagtccct
gcagcgtctgcggggaatggcagtttctttgctatgcctctcaacagccacccagtgagc
tgcacctccctaactaaccagcacatgtccttttctgttcctgctgcccatggactggaa
agaagcctcataatccctggtacgtagagtacagctatgggactgacctcagagtgccta
ccagcgagtgtgaaagggtaccaagagcctgcaggcttggcaggtcctcctcagcagata
tttaactttgttcttgaaaatggcacatctgatgttatagtatatccagtgctgacgtct
cccatggaaacattcatgtctccaagtactcccgttaatttatgtgatttagagaaattt
caagaagttcaagattccatcatttcttctggagaacctttcaaaagaccagagcaagtg
gaaaccttctgttcatcacttaaagattatttccgagacacgtgcaaatccgtgaccatg
gagcgggaagtaaatctggatcacctgttcattgataggacacttgttcaaagccaaact
gaaaccaagagtggaaaaaatagtgcaaaagcaatggaaaaggagctggtaacctgcagc
ctgcaagagaaagaaaagacagccattgatagaagccaaatatttcaaatcccacagcgt
aaagacttagagactaaagtgattgtggtgctaggaaaagcaggaatgggcaaaagcatt
ctggttcagaagatctgccaggactggtccaatggagagttttctcagtttgaatttgta
ttttggtttgactgcaaacaaataagcttgcctgagaagctatacagcctgaaggaactg
ctgcttgaattttttgtgaaacctcgagagggaagcaaagagatctttgagtatatgttg
caaaatcctgctaaagtccttctgatttttgatggttttaaaggattgcatgatcatgag
aattttcctcgttgctcagccagccagcctgaaaaggatttgtgcagtataaaggagctg
ctttcagcactcatccaaaaaaagatactcaatggctgtactttattatttacagcaaga
ccaaaagacaaactgtaccagtacgtgtccaaagtggataggactattgaaatagtagga
ttttcccctcagcagagagaattgtacgtaaccagatactttgaagagtcaccctactgt
gatagtgcactgaaattaatcaaagagtgtgagtacttgttcagtcattgctacagccct
gtcatgtgtagatttgtttgttttctctgtgaggctgtgcttgaaatgggagagaaaagt
cttccttcaactcttactgaagtcttcctgaaattttttcagcagaagataatgcttatg
caaacagatgttacagccacacaaaatcaagagagtcttgctaccctagcccgtatagcc
tggtatcttggagaaaagcaccaaagtgccatgaaaagtgatgttattccttctaaggaa
gttaaagagtttgcactgaagtatgggtttgtcctgccatttgcgttccccagacattcc
gatagtgaagaagaggaatttgggagcacattctctgattttgtcattcagaatttcttg
tgtgcgcttcaccttttgttagcagaagagctcaaggataaaaatctaacaaagtacctg
tcttttctatccaagaagaaaaaaccttataactggttagatttaatgcctcgatttttg
gtcggtttgatgtttctccaggatgaccccagtttctgctctctttcaaatgaggatgca
aaacagtcaaccaagaagcagaaggcactcatgaagtatattagaaggctgcagattaat
actctctgcccagagaggttgctggagcttttatgttgtgtttatgaaacacagaataat
tatcttctgcagcatgtggccttaagacttgagccagacttgtcttttctgggcatagtt
cttacaccgcctgatgtccacgtactgctctctattttgaaaaggtcaagaaaagagttt
tccttggatttgcaaaacaccagcattgacatgcaagggctgcaagccttggtcagcctg
aggaatgtgacatcgttcagggcctccctcagtgacacagtcaggctctggaagtcttta
gaacagacaaaagactacgaactgctgaaagcatccacagagaaatttgttcttgatccc
tttaaggcaaagacaatgaaggacatcagtgacctctccgaccttgtggagatgcaggag
aagatggtgaattgtgtgcaagaagcatctggttgcaccagctatgaaattcctgccatc
agaaacctcaggaaactggaatttgcgctgggtccagcatgtggccttcaaggactgcta
aaactcgtgaaaattcttgcagcatttccatcacttcagcatttagaccttgatgctctg
agtgaaaatggcataggagatgaaggagcaaagagcctatctgaagtttttccaaccctg
acatcactggaaacattaaatttatcacagaataaaatatcagacctgggtgcagagaac
cttgctgcagctctcccttccttgtcttccttaaaaacactaagcttgtacaataacaac
atttgtgattttggagcagaaaatctggcaaaggttcttcctgcaatgacatctttaagg
gtgctagatgttcagtataacaaaataactggtgttggagcccagcagctgactgacagc
ctacgaaaatgtccccatataaagaacttggtgatgtggaatcccaccattccctatgga
gttcttgaacaccttcaccagctggactctaggatcagtgtgtag
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