Hirundo rustica (Barn swallow): 120760205
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Entry
120760205 CDS
T09369
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03250
Viral life cycle - HIV-1
hrt04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120760205 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
120760205 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120760205 (SAMHD1)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120760205 (SAMHD1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
HD_assoc_2
HARE-HTH
Motif
Other DBs
NCBI-GeneID:
120760205
NCBI-ProteinID:
XP_039936137
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Position
16:complement(14436470..14462073)
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AA seq
606 aa
AA seq
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MGSPAGAPAKRVRYEGPRGPGSDRSDPRLWDTERLCQHLSLCGVGDPSLLRRFRESGVTG
RMLLDLPACAPELIRVCCPAERLEVMACLTQLQQQHMELTKVFNDPIHGHIELHPLLVRI
IDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRTLKERQPELNITQRD
ILCVEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLKWKHETASVQMFEHLITSNKLEEVME
SYGLVLEEDMFFIKEQIGGPIDEAACVKSWPYRGRPKEKSFLYEIVANKKNGIDVDKWDY
FARDCHHLGIPNNFDHKRLLIFTRVCEVENQKHICTRDKEVGNLYEMFHTRNCLHRRAYQ
HKTGNIIEIMITEAFQKADKSFEIRGSGGKVYRISTAMEDMEAYTKLTDCIYLEILHSSD
PELEEAREILRKIERRELYKFLGETRPESKKEIAKNDSLAESIANSKPEKDPPDVELKAE
NFIVDVISMDYGMKEQNPIDKVHFYCKADPSKAVKISKEQVSKLLPIIFMEQVVRVYYKS
QEPHIISAAKQYFVQWCMKNDFTKPQDGDVVAPHLTPMKETWNKMTDDEHRRASEPSCKQ
RLHFDE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggcgggcgctcccgccaagcgcgtgcggtacgaggggccgcgcggcccc
ggcagtgaccgcagcgacccgcggctgtgggacacggagcggctctgccagcacctctcc
ctctgcggcgtgggcgatcccagcctgctgcgccgcttccgagagagcggggtcaccggg
aggatgctgctggacctgccggcctgcgctcccgagctcatccgcgtctgctgtccagct
gagcgactggaagtgatggcgtgcctgacacagctgcaacagcagcacatggagttgacg
aaggtttttaacgatcctattcatgggcacattgaattgcatcccctgcttgttcggatc
atcgacacccctcaattccagcgcctccggtacatcaagcagctgggcggaacatacttt
gtttttccgggagcgtctcacaaccgctttgaacattccctaggggttggctaccttgca
ggatgtctggttcgtacactgaaggagagacagccagaactgaatataacccagagagac
attctctgtgtagaaattgctgggctttgtcatgatttgggtcatgggccattttcacac
atgtttgatggaagatttattccactcactcgtccagatttaaagtggaagcatgaaact
gcttctgttcaaatgtttgagcatttgatcacttccaataaacttgaagaagtcatggag
tcttatggtcttgttctggaggaagatatgttcttcatcaaggaacaaataggagggcct
atagatgaagctgcctgtgtgaaatcgtggccctaccgtggtcgaccaaaggagaaaagc
ttcctctatgagattgtagctaataaaaagaatggcattgatgttgacaagtgggattat
tttgcaagggattgccatcatctgggaatcccgaataattttgaccataagcgattgctt
atcttcactcgggtctgtgaagtggaaaaccagaagcacatctgcacccgtgacaaggaa
gttggaaatttgtatgagatgttccacacccggaactgcctgcaccggagagcataccag
cataagactggcaacatcattgaaataatgataacagaagcctttcaaaaagcagacaaa
tcttttgaaataagaggctctggaggaaaagtgtatcggatttctacagcaatggaagac
atggaagcctacactaaactaactgactgtatctacttggaaattttgcactcaagtgat
ccagaactggaggaggcacgagaaattttacgtaaaatagaacgacgtgaattatacaag
tttttaggagagactcgacctgaatcaaagaaggaaattgcaaagaacgatagcctggca
gaaagcattgctaattccaagccagagaaggaccctccagatgtggagctaaaggctgag
aatttcatagttgatgttatcagcatggattatggaatgaaggaacagaatccaattgat
aaggttcatttctattgcaaggctgatccttccaaggcagtcaaaattagtaaagaacag
gtttcaaagcttttacccataatatttatggagcaggttgtccgggtttattacaaaagt
caagaaccacatattatttcagctgcaaaacagtactttgttcagtggtgtatgaagaat
gatttcaccaaaccacaggatggtgatgttgttgctcctcatctaactccaatgaaggaa
acctggaataagatgacagatgatgagcacaggagagcctcagaacccagctgcaaacaa
aggcttcattttgatgagtaa
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