Hirundo rustica (Barn swallow): 120760376
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Entry
120760376 CDS
T09369
Symbol
CLTCL1
Name
(RefSeq) clathrin heavy chain 2 isoform X1
KO
K04646
clathrin heavy chain
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04142
Lysosome
hrt04144
Endocytosis
hrt05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120760376 (CLTCL1)
04142 Lysosome
120760376 (CLTCL1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120760376 (CLTCL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120760376 (CLTCL1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120760376 (CLTCL1)
Membrane trafficking [BR:
hrt04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
120760376 (CLTCL1)
Exosome [BR:
hrt04147
]
Exosomal proteins
Proteins found in most exosomes
120760376 (CLTCL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
capSnatchArena
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
120760376
NCBI-ProteinID:
XP_039936439
LinkDB
All DBs
Position
17:8485499..8520427
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMSDPTT
PIRRPISAESAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWISVNTVA
LVTETAVYHWSMEGESQPQKMFDRHASLAGCQIINYRTDEHQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFAEFKIEGNAKPSTLFCFAVRSPAGGKLHIIEVGQPATGN
QPFVKKAVDVFFPPEAQTDFPVAMQIGIKHGVIYLITKYGYIHMYDLESGVCIYMNRISA
DTIFVTAPHEPTSGIIGVNKKGQVLSVCVEEDNIVNYATNVLQNPDLGLRMAIRSNLAGA
EELFARKFNTLFAQGNYADAAKVAASAPKGILRTSDTIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRSVMRVSPEQGLQFSQMLVQDE
EPLANINQIVDVFMEHSLLQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRIPAVVGGLLDVDCSEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELYEEAFAIFRKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSAYMEV
VQAANRNDNWEDLVKFLQMARKKARESYVETELIFALAKTNRLSELEEFISGPNNAHIQQ
VGDRCYEEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSGRKANSTRTWKEVCFAC
VDGKEFRLAQICGLHIVIHADELEELISYYQDRGYFEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIIAKVANVELYYKALQFYLDYKPLLINDLLLVLSPRLDHTRTVNFFS
KVNQLLLVKPYLRSVQNHNNKGVNEALNNLLTEEEDFQGLRASIDAYDNFDNITLAQRLE
KHELIEFRRIAAYLYKGNNRWKQSVELCKKDRLYKDAMQYAAESKDAELAEKLLQWFLEE
GKQECFAACLFTCYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDGLFYKVDKL
DASESLRKEEEQVTEPTPIVFGQQLMLTAGPSAVPPQANFPYGYTAPGFTQPPVYGFNM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatactgcccattcgcttccaggagcacttccagctccaaaatttgggcatt
aatccagcaaacattggattcagcaccctaacaatggaatctgacaagttcatctgcata
agggagaaagtaggagagcaggcacaggtagtgataattgatatgagtgatccaacaaca
cccatcagacgtccaatttctgcagaaagtgccataatgaacccagcctctaaagtaata
gcgctaaaagctgggaaaacacttcagatctttaacattgagatgaaaagtaaaatgaaa
gcccacacaatggcagaggaagtgatcttctggaaatggatatctgtaaatacagttgcc
ttggtgacagagacagcagtgtaccactggagcatggagggagaatcacaaccccaaaag
atgtttgatagacatgctagtcttgcaggctgccaaatcatcaattacagaacagatgaa
caccaaaaatggctgctgctgataggaatttcagcacagcaaaatcgtgtggttggtgca
atgcagctgtactcggttgatagaaaagtctcccaacctatagaaggccatgcagcagct
tttgcagaattcaaaatagagggaaatgccaaaccttctacccttttctgttttgctgtg
aggagtcctgcaggaggcaagctgcacataatcgaagtaggtcagccagctactggaaat
cagccatttgttaagaaagctgttgatgtgtttttcccacctgaggcacaaacagacttt
cctgtggcaatgcagattggaattaagcatggtgttatttatctgatcacaaagtatgga
tatatccacatgtatgatctggagtctggagtgtgcatctacatgaaccgtattagtgct
gatactatctttgtcacagctcctcatgaacctacctcaggcattattggtgtgaacaaa
aaaggacaggtgctttctgtatgtgttgaggaagacaacatagtgaactatgctacgaat
gttctccagaatcctgacttgggactgcgaatggctatacgtagtaacctagctggggca
gaggaattatttgccagaaagtttaacacactgtttgctcaaggaaactatgcagatgct
gctaaagtagctgcgtctgcaccaaagggaattctacgtaccagtgatacaattaggaag
ttccagagtgtgccagctcagcctgggcaggcctctcccctgctccagtactttggaata
ttgcttgaccagggacagctgaacaagtttgagtctctggagctctgtcgccccgtgctg
cagcagggccgcaaacagcttctggagaagtggctgaaggaagacaagctggagtgttca
gaagagctgggagatttggtgaagacggctgacccaacccttgcgctcagcgtctacctt
cgagctaatgtgccaaacaaagtgattcagtgctttgctgaaactggtcaattccagaaa
atagtgctgtatgctaagaaggttggctataccccagactggatcttcctgctgagaagt
gtgatgagagtcagtccagaacaaggcctgcagttctctcagatgctggtacaggatgag
gagccgctggctaatattaaccagattgtggatgtgttcatggagcacagtcttctgcag
cagtgcacgtcctttttgttggatgccctgaaaaacaaccgccctgcagaaggccacctt
cagacccgtctcctggaaatgaatttgattcatgccccgcaggttgcagatgccattctc
gggaaccagatgtttacacactatgatcgtgctcatgttgcccagctgtgtgaaaaggca
ggcttgctccagcgagctttggaacactacactgatctctacgatattaaacgtgcagtt
gttcatactcacctcttgaatcctgagtggcttgtgaacttctttggctctctctcagtt
gaagactctgtggagtgtttgcgtgccatgctgtcagccaacattaggcaaaacctgcag
ctctgtgtgcaagttgcttctaaataccatgaacagctgggcacccagtctcttgtggag
ctttttgaatctttcaaaagctatgaaggactgttctatttcttgggttccattgtaaac
tttagccaggacccagatgttcacttcaagtacatccaggcagcttgcaagactgggcag
ataaaggaagtggaaagaatctgccgtgaaagtaactgctataacccagaacgagtgaag
aactttctcaaggaggcaaagctcacagatcagcttcctctgatcatcgtctgtgatcgg
tttgactttgttcatgacctggtgctctatttatatcgcaataatctgcagaagtatatc
gagatctacgtacagaaggtgaatcctagccgtataccagcagtggttggagggcttctt
gatgtagattgttctgaagatgtcatcaagaacttaatcatggtggtgagagggcagttc
tccacggatgagctggtggctgaagtggaaaaaagaaatcggcttaagttgctgttgcca
tggcttgaatcaaggattcatgaaggctgtgaagaacctgcgactcataatgctttggcc
aaaatctacattgacagtaataataatccagagcgcttccttcgtgagaatccttactat
gacagccgtgtagttggcaaatattgtgaaaagagggaccctcatctggcctgcgttgct
tatgagagggggcagtgtgatctggaactcataaaggtgtgcaatgagaactccctgttt
aagagcgaggctcgctatctggtgcgcaggaaggaccctgagctctgggcaaatgttctg
gaagaaaacaacccgttcaggcggcagcttattgaccaggttgtccaaacagctttatca
gagacacaggatccagaggaagtttctgtaacagtgaaagctttcatgactgcagatctg
ccaaatgaactgattgagttattggaaaaaattgttttggataattctgtattcagtgaa
cacaggaatctccagaatctgctgatcctaacggccattaaggctgaccgcacccgagtg
atggaatacatcaatcggctggataactatgatgccccagatattgcaaacattgccatc
agtaatgagctatatgaggaagcctttgctatattcagaaaattcgatgtcaatacttca
gcaattcaggtgctgattgagcacattggcaacttagaccgtgcttatgaatttgcagag
agatgtaatgaaccagcagtgtggagccagctggccagagcacagctccagaaggacttg
gtgaaggaagccattgactcctatataaaggcagatgatccatctgcctacatggaagtt
gttcaggcagctaatagaaatgataattgggaggacctagtcaagttcttacagatggcc
aggaagaaggctagagagtcttatgtagagacagaacttatttttgctttggcaaaaact
aaccgtctgtcagaattggaggagtttattagtggccctaataatgcccatatacaacag
gttggtgatcgctgttatgaagaggggatgtatgaagcagcaaaacttctttataacaac
gtgtccaacttcgctcgcctggcatctaccttggtgcaccttggggagtatcaggccgca
gtggacagtggccgcaaagccaatagcacaaggacttggaaggaggtctgctttgcctgt
gtggatggaaaagaattccgcttggcacagatctgtggcttacacatagtcatccatgct
gatgaacttgaggagctgataagttactatcaggatcgtggctactttgaagaactgatt
gcccttttggaagctgctttgggtctagagcgtgctcacatggggatgtttactgaactt
gccatcttatactccaaattcaagcctcagaaaatgagggaacatctggagcttttctgg
tctagagttaatattccaaaggtgctcagagctgcagaacaggctcatctctgggcagaa
cttgtattcctctatgacaagtacgaggagtatgacaatgcaataattactatgatgaat
catcccactgatgcctggaaagaaggccagtttaaagacataattgccaaggtggccaat
gtggagctgtactacaaagccttgcagttctacttagactacaaacctctgctgatcaat
gatctcctgcttgtattatcaccacgactggatcacaccaggacagtcaattttttctca
aaggttaatcagctacttctggtaaagccttatctgcgttcagtccagaaccacaacaac
aaaggagttaacgaagctctaaacaaccttttaacagaagaggaagatttccagggtttg
agagcttccattgatgcctatgacaactttgataacataacgttggctcagcgtctggaa
aagcatgaactaattgaatttaggcgtattgcagcgtacttgtacaagggtaacaaccgc
tggaaacagagtgtggagctgtgcaagaaagaccgtctgtataaggatgctatgcagtat
gctgcagagtccaaagatgcagagctggctgagaagctgctccagtggttcttggaagaa
ggcaagcaggagtgttttgcagcctgccttttcacgtgctatgacttgctgcacccagat
gtagtccttgagttggcatggagacataacatcatggactttgcaatgccttatttcatc
caagtgatgagagagtaccttaccaaagttgatggactgttctataaggtggataaactt
gatgcttctgaaagcctaagaaaagaagaggaacaagtaactgaacccactccaatagta
tttggccagcagttgatgttaacagcaggccccagtgcagtacctccccaggcaaacttc
ccatatggatacacagcaccaggattcacccagccgcctgtttatggtttcaatatgtaa
DBGET
integrated database retrieval system
