Hirundo rustica (Barn swallow): 120760609
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Entry
120760609 CDS
T09369
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120760609 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120760609 (THOC5)
03041 Spliceosome [BR:
hrt03041
]
120760609 (THOC5)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120760609 (THOC5)
Spliceosome [BR:
hrt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120760609 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
120760609
NCBI-ProteinID:
XP_039936993
LinkDB
All DBs
Position
17:complement(12369455..12382681)
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AA seq
683 aa
AA seq
DB search
MSSESSKKRKPKVIRTDGVPAEGKRGKGDTDQDVRYYSEESEVDLRDPIKDYELYRETCQ
ELQRLMAEIQELKSRGIKENASEIDERRVQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYKEAPPEISRPAITL
SEPHQQTLARLDWELEQRKRLAEKYKECLTSKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTLDLKCKDENVL
HLTFYYLMNLNVMTVKAKVTTAVEMTTAISAGDLLSPDSLLNCLYPGDHGRKTPNPANQF
QFDKVGILTLSDYVTELGHPYVWVQKLGGLHFPKEQPQHTVAADNSLSASHMELTVKLLR
SRLQSRLALHKQFASLEHGVVPVSSECQQLFPTKIVSRLVKWTAIPYEDYAELPYTKDVI
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSTLPPVFSLCLNWKGERNSSNDDNIRA
MESEVNVYYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDPSVEGPKEFPQEKMCLR
LVRGPLRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgagtccagcaagaagaggaagcccaaggtgatccgcacggatggggtccca
gccgagggcaagcggggcaagggcgacacggaccaggatgtcaggtactacagcgaggag
agcgaggtggatctgcgcgaccccatcaaggactacgagctctacagggagacctgccag
gagctccagaggctcatggcagagatccaggagctgaagagccggggcatcaaggaaaat
gcctcggagatcgacgagcggcgcgtccagagctgtgtccacttcatgaccctgaagaag
ctgaaccgcctggctcacatccggctgaagaaaggcagggaccagacccacgaggcaaag
cagaaggtcgatgcctatcacctgcagctccagaacctgctctacgaggtgatgcacctg
cagaaagagatcaccaagtgcctggagttcaaatccaaacacgaggagatcgagctggtg
agcttggaggagttctacaaagaggccccccctgaaatcagccgccctgccatcaccctg
agtgagccccaccagcagaccctggcccgcctggactgggagctggagcagcgcaagagg
ctggcagagaagtacaaggagtgcctgaccagcaaggagaagatcctgaaggagatcgag
gtgaagaaggaatatctgagcagcttgcagcctcgactcaacagcatcatgcaggcctcc
ctgcctgtccaggagtacctgttcatgccctttgaccaggctcacaagcagtacgagacc
gcccggcacctcccgccgcctctctacgtcctctttgtccaagccagcgcctatggacag
gcctgtgataagaagcttgtggtggccattgaagggagcgtggaggaggccaaagccctt
tataaaccacctgaggactcgcaggacgatgagagcgattccgacgcagaggaggagcaa
accacgaagcggcgcaggcccaccctgggcgtgcagctggacgacaaacgcaaggagatg
ctgaagcgacaccccttgtccgtcaccctcgacctgaagtgcaaagatgagaacgtgctt
cacctgaccttctactacctgatgaacctcaatgtcatgacggtaaaagccaaggtgacc
actgctgtggagatgaccacggccatcagtgctggggacctgctctccccagactccctc
ctcaactgcctctatcctggggaccacgggaggaaaacgcccaaccccgccaaccagttc
cagttcgataaagtgggcatcctgaccctgagtgactacgtgacagagctgggacacccc
tacgtgtgggtgcagaagctgggcggcctgcatttccccaaggaacagcctcagcacacg
gtggctgctgacaattccctgagtgccagccacatggagctgacggtgaagctgctgcgg
agccgcctgcagtcccgcctggccctgcacaagcagtttgcatccctcgagcacggcgtt
gtgcccgtgtccagcgagtgccagcagctcttcccgaccaaaatcgtctcacgcctggtg
aagtggactgccattccctatgaggattatgctgagctgccctacactaaggatgtgata
gaggccggcttggctgaagacacccacctctactacatggccctgatagagaggggaaca
gccaagctccaggcggccgtggtgctgaatcccggctattccacgctgcctcccgtcttc
agcctgtgcctgaactggaagggagagcggaacagcagcaacgacgacaacatccgggcc
atggagagcgaggtcaatgtctactacaaggagctgtgggggcccaaacccggctaccag
ctgctcaccaaccagctgcagcgcctgtgcatggtgctggacgtgtacctggagacagag
ccccacgatcccagcgtggaggggcccaaggaattcccccaggagaagatgtgtctgcgc
ctggtcaggggtcccctgcgcctgaaacccttcaagttcaactatccccaggggttcttc
agccaccgctga
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