Hirundo rustica (Barn swallow): 120761231
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Entry
120761231 CDS
T09369
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120761231 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120761231 (PRPF8)
Spliceosome [BR:
hrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120761231 (PRPF8)
Complex C
U5 SnRNP specific factors
120761231 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120761231
NCBI-ProteinID:
XP_039938196
LinkDB
All DBs
Position
19:4815983..4834039
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgactacatgtccgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgccccccgagcatgtccgcaagatcatccgcgaccacggcgacatgaccaataggaaa
ttccggcacgacaagcgcgtctacctgggtgctctgaagtacatgccccatgctgtgctg
aagctcctggagaacatgcccatgccctgggagcagatccgagacgttcccgtcctgtac
cacatcaccggcgccatctcctttgtcaacgagatcccctgggtcatcgagcccgtctac
attgcccagtggggctccatgtggattatgatgaggcgggagaagagggacaggcgtcac
ttcaagaggatgagattccccccgttcgatgatgaagaaccccctctggattacgctgat
aacatcctggatgtggagcccctggaagccattcagctggagctggatccagaggaggat
gcccctgtgctggactggttctatgaccaccagcctctgaaggacaacaggaagtacgtc
aacggctccacgtaccagcgctggcagttcaccctgcccatgatgtccaccctgtaccgc
ctggccaaccagctgctcaccgacctggtggatgacaactacttctatctgtttgacctg
aaagcgttcttcacctccaaggcgctgaacatggccattcctggagggcccaagtttgag
ccccttgtcagagacatcaatcttcaggatgaggactggaatgaatttaatgacatcaac
aaaatcatcatcaggcagcccatcaggacagagtacaaaattgcttttccctacctgtac
aacaacctgccacaccacgtccacctcacctggtatcatactccaaacgttgttttcatt
aaaacagaagatcctgacctcccagctttttacttcgatcctctgatcaaccccatttca
cacagacattctgtcaagagccaggaaccgcttcctgatgacgatgaggagtttgagttg
ccagagtttgtggagcctttcctgaaggatactcctctctacactgataacacagccaat
ggcattgccttgctgtgggccccacgacccttcaatctgaggtctggcaggacccggaga
gctcttgacatcccgctggtcaagaactggtaccgtgagcactgcccagcaggacagcca
gtcaaggtgagagtctcctaccagaagctcctgaaatactacgtgctgaatgcactcaaa
cacagacctcccaaggcccagaaaaagaggtacctgttccgctctttcaaggctaccaag
tttttccagtcgaccaagctggactgggtggaagttggcctgcaagtttgtcgccagggc
tacaacatgctgaacctgctgatccacagaaagaacctgaattaccttcacctggattac
aacttcaacctgaagcctgtgaagaccctcaccacgaaggaaagaaagaaatcccgtttt
gggaacgctttccatctgtgccgagaggtcctgcggctgaccaagctggtggtggacagc
cacgtccagtacagactgggaaatgtggatgcgtttcagctggcagatggcctgcagtac
atctttgcccatgtgggtcagctcacggggatgtaccgctacaaatacaaactgatgagg
caaattcgaatgtgcaaggacctgaaacatctcatctattacaggtttaacacagggccc
gtgggcaaaggtcctggctgtggtttctgggctccaggctggagagtgtggctgttcttc
atgagaggcatcaccccgctgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactccaagggtgtcgcaaagactgtcacgaagcagcgcgtggagtctcac
tttgacctggagctcagggcagctgtgatgcacgacatcctggacatgatgccagaaggg
atcaagcagaacaaagccagaaccatcctgcagcacctgagcgaggcttggcgctgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtacgtgaaggccaaagctgactggtggacaaacacggctcactacaaccgggagcgg
atccgccgcggagccaccgtcgacaaaaccgtctgtaaaaagaacctgggcaggctgacc
agactctacctgaaagctgagcaggaacggcagcataattacctgaaggacgggccttac
atcactgcggaagaggccgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctcccccattcccttccctccactgtcctacaagcatgacaccaagctgctgatc
ttagccctggagaggctgaaggaagcttacagtgtgaagtcacgcctgaatcaatcacag
agagaggagctgggcctgattgagcaggcttatgataatccccacgaagctctgtccaga
atcaagcgacatctgttgactcagagagccttcaaggaggtgggaattgagttcatggat
ctctacagccacttggtccctgtttatgatgttgagcccctggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggctgataagcgaaggctcttccctccttggatc
aaacctgctgacactgaaccgcccccactgctggtgtacaagtggtgccaaggcattaac
aacctgcaggatgtttgggaaaccagcgaaggggaatgcaacgtgatgctggaatctcgg
tttgagaagatgtacgagaagattgacctgaccttgctcaacaggctgctgcgtctcatc
gttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaaccacacaaactcctacgggattattcgtgggctgcagtttgcttccttcata
gtccagtactatgggcttgtgatggacctgctggtgctgggcctgcaccgggccagtgag
atggccgggcctccccagatgccaaacgacttcctcagcttccaggacattgccacggag
gtggcacaccccattcgcctcttctgcagatacatcgacaggatccacatcttcttcagg
tttacagctgacgaggcaagagacctgatccagcggtacctgactgagcacccagacccc
aacaacgagaacatcgtgggctacaacaacaagaagtgctggccccgggatgctcggatg
cgcctcatgaagcacgacgtgaacctcggccgcgctgtgttctgggatatcaagaaccgc
ttgccccgctcggtgaccacggtgcagtgggagaacagcttcgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcagaacgaggtc
accaaggagcgcacggctcagtgcttcctgcgtgtggatgatgagtctatgcagaggttt
cacaacagagtgaggcagatcctcatggcctctggctccacgaccttcactaagattgtc
aataaatggaacacagctctgattggcttgatgacttatttccgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgcgagaataaaatccagactcggatcaag
attggcctgaactccaaaatgcccagccgttttcctcctgtggtgttctacacccctaag
gagctgggggggctgggcatgctctccatgggccacgttctcatccctcagtctgacctg
aggtggtccaagcagacggatgttggcatcactcacttccgctcgggaatgagtcacgag
gaggaccagctcatcccaaatctgtatcgctacatccagccatgggagagtgaattcatt
gactctcagagggtgtgggcagagtacgccctgaaacgacaggaggctatagcccagaac
aggcgtctgacgctggaggatctggaggactcgtgggacaggggaattcctcgcattaac
acccttttccagaaggacaggcacactctggcttatgataaaggatggagagtcaggact
gacttcaaacagtaccaggtgctgaagcagaacccgttctggtggacacaccaacgccac
gatggcaaactctggaacctgaacaattaccgcacggacatgatccaggctctgggcggg
gtggaagggatcctggagcacacgctcttcaagggcacctacttccccacgtgggagggt
ctcttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcactctctggtggtctcct
accattaacagagccaatgtgtatgttgggttccaggtgcagctggatttgacagggatc
ttcatgcacggcaaaatccccacgctgaagatttccctcatccagattttccgagctcac
ttgtggcagaagatccacgagagcattgtcatggacttgtgtcaggtctttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcctac
aagatgaattcctcatgtgcagatatcctcctctttgcttcctacaagtggaatgtgtca
cgtccatccttgctggcagattccaaggatgtgatggacagcaccaccacccagaagtac
tggattgacatccagctgcgctggggcgactacgactcgcacgacatcgagcgctacgcg
agggccaagttcctggactacaccacggacaacatgagcatctacccctctcccactggg
gtgctcattgctattgatctggcctacaacttgcacagtgcttatgggaactggttcccc
gggagcaaacctctgatccagcaggccatggccaaaatcatgaaagcaaaccctgccctg
tatgtgctgagggaacgaatccgcaaagggctgcagctctactcctcggagcccacggag
ccctacctgtcctcccagaactatggggagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtctacagagtcaccatccacaagacttttgaagggaatttgaccaca
aaacccatcaacggagccatcttcatcttcaatcccagaactggacagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaagaagtggctgccttgatccgatcccttcccgtggaggagcagccgaagcag
atcatcgtgacacggaagggcatgctggacccactcgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcggagctgcagctacccttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctcaaggccactgaaccccagatggttctcttcaatctctac
gatgactggctgaaaaccatctcttcctacacagcattctcccgtctgatcctgattctc
cgggcgctgcacgtgaataacgatcgagccaaagttatcctgaagccagacaagacaacc
atcactgagcctcaccacatctggccaaccctgactgatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaacgtcgca
tccctgacgcagtcagagatccgagacatcatcctgggcatggagatctctgccccgtct
cagcagaggcagcagattgcagaaatcgagaagcaaaccaaggagcagtcgcagctgacg
gccacgcagacccgcacggtgaacaaacacggcgatgaaatcatcacctccaccaccagc
aactacgaaacccaaaccttctcctccaagactgagtggagggtcagagcaatttccgct
gccaacctccacctgcggacgaaccacatctacgtctcatcggatgacataaaggagacg
ggttacacctacattctccccaaaaatgtgttgaagaagttcatctgcatctcagacctg
cgggcccagattgcaggttacctgtatggagtgagccctccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgccgcagtgggggacacaccagaccgtgcacctccca
gggcagctgccacagcacgagtatctcaaggaaatggaacctctgggatggattcacacc
caaccaaacgagtcccctcagctctcaccgcaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacccct
ggctcctgcacgttgaccgcctacaaactgaccccgagcggctacgagtggggccggcag
aacacggacaaagggaacaatcccaagggttacctcccctcccactacgagagggtgcag
atgctgctgtccgaccgcttcctcggcttcttcatggtcccagcacagggctcctggaac
tacaacttcatgggtgtccgccacgaccccaacatgaaatacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccctctcacttcctcaacttcgcgctgctg
caggagggggaggtttactccgccgaccgcgaggatctctacgcctaa
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integrated database retrieval system
