Hirundo rustica (Barn swallow): 120761437
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Entry
120761437 CDS
T09369
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03030
DNA replication
hrt03420
Nucleotide excision repair
hrt03430
Mismatch repair
hrt03440
Homologous recombination
hrt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120761437 (RPA1)
03420 Nucleotide excision repair
120761437 (RPA1)
03430 Mismatch repair
120761437 (RPA1)
03440 Homologous recombination
120761437 (RPA1)
03460 Fanconi anemia pathway
120761437 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrt03000
]
120761437 (RPA1)
03032 DNA replication proteins [BR:
hrt03032
]
120761437 (RPA1)
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120761437 (RPA1)
Transcription factors [BR:
hrt03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120761437 (RPA1)
DNA replication proteins [BR:
hrt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120761437 (RPA1)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120761437 (RPA1)
MMR (mismatch excision repair)
120761437 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
120761437 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
120761437
NCBI-ProteinID:
XP_039938599
LinkDB
All DBs
Position
19:complement(4729641..4752532)
Genome browser
AA seq
613 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEDVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSARCICQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAGNSAPSKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQAKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLLELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENTPKDSIVDVIGICKSYEEVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
ASISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENSMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLITIADCLEYQWVTCFQDTAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgaaggggccatcgcggccataatgcaaggggaggacgtctcc
aagcccgtgctgcaagtcattaatacacgggctattgccacgggaactgggcccccacga
taccgggtgctgatgagtgatggggtgaacaccctctcctctttcatgttggcaacacag
ctgaactccctggtggaagaggagcgcttgtcagcccggtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
ctgcaaactgctgatcaggttggtgggcctattggcaatccccagccttacaacgaagga
caagggcagcgttctgcagctccagcagggaactcagcacccagcaaaccacagcaacag
aacggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaaccag
tttggaaaagcgagtgctcccagtgccctgaagacgcctggggggtctcaggccaaagtg
gtgccgattgccagcttgaacccataccagtccaagtggaccatttgtgctcgggttacc
caaaaaggtcagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttctttccactccttgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacacgcccaaagactcgattgttgatgtaattggaatttgcaag
agctacgaagaagtcactaaaattacagtgaaggccaacaatagggaggtttcaaagagg
aacgtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggggcccgtgtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaatgt
gcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaattggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaacagcatgtaccaggcatgtccctctcag
gattgcaacaagaaagtgatagaccagcaaaatggactttaccgctgcgagaagtgcgac
cgcgaattccccaacttcaagtaccgcctgatgctcctgattaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagacacagcagaattcattcttggtcaaaacgca
gctttcctgggagagctgaaggaaaagaacgagcaggcttttgaagaagtgttccagaac
gcaaacttcaacacctacgagttcaggatccgagtgaaactggagacttacaacgacgaa
tctcgtattaaagccacagcgatggacgtcaaaccagtgaactacagagaatacagcaag
aggttgattgccaacatcaggagaaatgctcagctggggtga
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