Hirundo rustica (Barn swallow): 120761653 Help Entry 120761653         CDS       T09369                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism hrt  Hirundo rustica (Barn swallow) Brite KEGG Orthology (KO) [BR:hrt00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:hrt03021]     120761653 (SETX) Enzymes [BR:hrt01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      120761653 (SETX)     5.6.2.5  RNA 5'-3' helicase      120761653 (SETX) Transcription machinery [BR:hrt03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      120761653 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 UvrD-helicase Viral_helicase1 AAA_22 SLFN-g3_helicase AAA_16 ResIII RNA_helicase nSTAND3 SAS4 Motif Other DBs NCBI-GeneID:  120761653 NCBI-ProteinID:  XP_039939050 LinkDB All DBs Position 20:4173091..4202866 Genome browser AA seq 2822 aa AA seqDB search MSTCRWCTPSGADTTDFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE NLWELETSRLVAHMEKSMNEETGEDDELFLIDERGETPLSGFVGPNFENNLRVPMLEILK YPYLLLHEKVSELCVEVLCKMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGRLILLPAHLYDTANYKNYWL GICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEVADDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKAEPESDYGDDMISCSQIVYN YNTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHGTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKDILIEGFQQCDKISEFFLLILVSIVELHRSKKCLHLL WISSQEWVEAVVRCATLPSSAFTRCSEKALGLCAKGSGPFQAPSSVQHACVQLIRSLLKE GYQIGQHTLCKQYLDKLNLLLRGNRAVGWQLSSQETQELRTCLRQVIRSIKGKPLSTALA GGSSSNSTALPPVSLKPERNGCDDGYKMSGHEREDLYSPLVMSKEGRDCQENPSHRRKNA WEEDCRDACSSSKSCTPTEGILMNIKKEPGDLTAQEFIFAQNPLATKVFGKVEENRSYNL AAGKCNMDDQCFNSNNQHSGEDLRRGRELEMKHRTEPETSSYLPAQTHLDSPSSRNCKSV QETSANSVLQFGLVPNKQVSKEASLDCSNSSRNEPGVQGKENDSTLLLGRNDTSLKKVPI EEKSQSSLMSFFKKKTNMQTSGQEQPNLNDLDKYDCENQFSETFCRDKTPACGYFPYSSE NKRDMNRPLSVKRESSDRLFEFSEYFKRENSSVGKKEEDFVKMVSNDDALSDSQVDRELS KLSLVAYAKSVNFPVASNQESSVYHNVSDIKRKVKGSVRSSNEGQSTRCPSGADGPSNQV IVISDSSDEEKCVASKEETKTKSENVCAEQSATSSSTSDGATKRESESPGSPLLLDDCDS QYFEFETEAEVFSAWQDTQAYAAEATQEYKQDHVSPPAETSNSDDCLIDDLNDWGYDLHY FSDDAMEESANSIEKQEEDTSHQKEADDKKEATASTSKESAGSEVAKDQLEKCANKGTAK GFTLDSKLPKLRASTSPMSLASKLALKKNSTSPQKTAAKRKSAPALQRSPKKPPVVKAAK NKTPHQSTTERSQPGRSTPAVVPPRKVRQSPAPASTVEKLGLKKGPRKAFDLSQPSLESL AQLRSHGKAAGRIGVAQKKRTKQIEAQRLSVKYNKKMLICQDRHYPRQTKPKRSVKNYAG SLESRNKVAKACAKPVEQKPHSFELAAIKESVENRREKKREEAFWPSASERKFESLSVEE VASASKMPCSSDWNRKWEDNSVVVPPVPMDSSLSSTALGDQKDESSGKGCTVLPECEVKT SKQNGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAVIGSKTPEEMDVDESLQQN EPSAVVKCKDKDCMEQVEKPGEYCSKHPATSPGADHVFAKPSLLPPKIRKPSTAKIFSTT SSSRNAAFSKDLEDVRKLPPPSKSKVNAARAAVVRPPPYPKPAPAGNPTCRSPSVSNVPQ PLGSNNVLQSQNRHHDNASNIFRGPGRETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFS LFGTPNNLLQSIVASVPVKFQGYNDYFNTFFPLMMLNAFETLAQEWVENQKAKEKSYCFY LQSFSADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDAFGEESRLENPIVNHVG LVTRFSRASGYANRQKEQQTACHLTVQTQGNLSFLIHKQVKCVVVGSLVTTHRKFKALLL LSRSPLARPIMNPSYNDFCPRDLPVASGSAVSYMNEYNEDQKRAIETAYAMVKQHPGLPK ICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTAQKKNSKIKPNRFLVCAPSNAAVDELM KKIIVAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINNEVRGFSLDKQVEHRMKRKPGDCD QDIQKKKEALDEKLDRLSRERAMHKCEKRENQMLNDEIGRLAKERQQLASQLKEVRGHSQ KVQADIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHR CNKLVLVGDPKQLPPTVKSVKAQQYGYDQSLMARLQRHLEEQVQRNVLRSLPVVQLTVQY RMHPDICLFPSNYVYGKTLKTAKSVEENRCSSEWPFQPYLIFDVADGREERDKDSYSNPR EVKLVMELIRTIKEKRNDLGLRRIGIITPYSAQKKKIQEQLDSAFKNNSPGEVDTVDAFQ GREKDCIIVSCVRANSSEGSAPAYVQANKGSIGFLASLQRLNVTITRARFSLFILGRLQT LMEDKNWNHLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQSPAKGGAMTSPVVQAGS SSGKRNDPGNSGNGPQELAAGPGHAVPQGNRGPTPAADSRRGSAPASMGAPAADSRRGSA PPSVGAPAADSRRGSAPPSVGAPAADSRRGSAPASVGAAAADSRRGSAPPSVGAPAADSR RGSAPPSVGAADSRRGSAPPSVGAAAADSRRGSAPAPLGAATLAANPEKPRDPRLASLAS RTEAKGKEQPLRDGHQSAQSNPGSTPQRGLDVSSAARDHICRTENAKKAQQTAGQCSVLP AAPHTAQHKGDRGAAVPKSGSKAVQSSSGEWNKDSHGLSRRPSQESPENRESSSAKRRKI FP NT seq 8469 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgccgatggtgcacaccgagtggtgctgacaccaccgacttcctgaagcac tatgctgctcagaggctttcccaggaagattttgaaggatccaatgatgacctctgttac tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagattgcatgag aacctgtgggagttggaaacctcgcgcctcgttgcccacatggagaaatccatgaacgag gaaacaggagaagatgatgagttgtttctgatcgatgagcgtggggagacacctctgtct ggttttgtgggcccaaattttgagaacaacctgcgagtgcccatgctggaaatactgaaa tacccgtatctgctgctgcacgagaaagtcagtgagctgtgtgtagaagtgctctgtaaa atggagctaagtcatgactcctttcaggtctttgagaaatacccaggcatttatctcttt ttggtacacccaaatgaggtgattcgtcgatgggccatcctaacggcaaggaatttagga aaggttgacagggatgattactatgacttagaggaagtgctgacctgtttgttcaaagtt attgagttggggctttttgagaatccagatatttacagctcctcaatgtttgaaaagggc agactcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctg ggaatttgcatgttgctgtcagtgctggaggaacaagctatggactctttgttactgggc ccagacaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagtagct gatgattccactgaccccttctggcctgccctgcactgtttcatggttattttggatcag ctcggatcaaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatc aacagtgtgagctacaacaatgaaatcaaaaatattcgcagtagcttcaggaggacaaaa gctgaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataat tataacacagaaaagcctcaaaaggacactggctggaaggctgccatctgcccagaatac tgccccaacatgtatgaagacatgcagaccctggctaacatgcttcagtctgacataggc agagacatgcgtgtccatcacggcacattcctctggttcatcccttttgttcagtccctt atggatctcaaagacttgggtgtagcctatatagtagaggtcatccactacctctgctca gaaatcaaagatatcctcatcgaaggattccagcagtgcgacaaaatctccgagttcttc ctcctcatcttggtgtccattgttgagctacaccgaagtaagaagtgcctgcatttgctg tggatcagctcccaggagtgggtggaggcggtggtgaggtgtgccacgctcccgagcagc gccttcactcggtgcagcgagaaggcgctggggctgtgtgccaagggctcggggcctttc caggcccccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaaggag ggctaccagatcggccagcacaccctgtgcaagcagtacctggacaaactcaacctcctc ctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacccaggagctgcga acgtgtttaaggcaagttataagaagtataaagggcaaaccactaagcaccgctttggct ggaggaagcagttcaaactcaacagctttgccacctgtctctctaaagcccgagaggaac gggtgtgatgatggatacaagatgagtggacatgagagagaggacctttattcaccactt gtcatgtcaaaggaaggcagagactgtcaagagaacccttcccacaggagaaaaaatgcc tgggaagaggactgtagagatgcatgtagtagttcaaagtcttgcacacccacagaaggc atcttgatgaatattaaaaaggagcctggtgacttgacagctcaggagtttatcttcgca cagaaccctttggcaacaaaagtatttgggaaagttgaggagaataggagctataatctt gcagcggggaaatgcaatatggacgatcagtgcttcaattcaaacaaccagcattcagga gaggatttgaggagaggcagagagttagaaatgaaacacagaacagaacccgaaacatca tcatatctgcctgctcaaactcatcttgattctccatcttcaaggaattgcaaaagtgtg caggagacaagtgcaaacagtgtgttgcagtttggactggtccccaataaacaggtgtcc aaggaagcatcactagattgctctaactcctctagaaatgaacctggtgtgcaagggaag gaaaatgacagtactttgcttctaggacgtaatgacacctcactgaaaaaagtaccaata gaagaaaaatcacaatcatccttgatgtccttctttaagaaaaagactaacatgcaaact tcaggtcaagagcagcctaatctaaatgatttggataagtatgactgcgaaaatcaattt tcagagaccttttgtagggataaaactccagcgtgtggctattttccgtatagctctgaa aacaagagggatatgaacaggcctctgtcagtgaagcgtgaatcaagtgacaggttgttt gagttttcagaatatttcaagagggaaaacagttcggtggggaagaaagaggaggatttt gtgaagatggtttctaatgatgatgctttatcagattcccaggttgatagagaactcagt aaattgtctttagttgcttatgccaaaagtgtcaattttcctgttgcatccaaccaggaa agctcagtgtaccacaatgtgtctgatattaaaaggaaagtgaaaggttctgtaagatct tccaacgagggccaaagtaccaggtgtcccagtggtgcagatggccctagcaatcaagtc attgtcatttcagactcttctgatgaggaaaaatgcgtggccagcaaggaagaaacaaaa accaagagtgaaaatgtatgtgcagagcaatctgcaacatccagcagcacttctgatggt gccactaaaagagaatcagagtctccaggctctcccttattactggatgactgcgattct cagtactttgaatttgaaacagaagctgaggttttttcggcttggcaggatacgcaagcg tatgctgcggaagcaactcaggagtataaacaagatcatgtttcaccaccagctgagacc agtaattcagatgactgcctgattgatgacttaaatgactggggctatgatcttcattac tttagtgatgatgccatggaagaatcagcaaactcaatagaaaagcaggaggaagatact tctcatcagaaagaggctgatgataaaaaagaagcaactgcttcaacctcgaaagaatca gctggcagtgaagttgcaaaggatcaactggagaaatgtgcaaacaaaggtactgctaaa ggctttaccctggactccaaattgcctaaactcagagcatctacatctcccatgtcatta gcttcaaagttggcccttaagaagaatagcacaagcccgcagaagaccgcagcaaaacgt aaatcagcaccggctcttcagagaagtcctaaaaaacctcccgttgttaaagcagccaaa aataaaacgccgcaccaaagcacgacagaacgttctcagcctggcaggtcgacgcctgcc gtggttcctccaaggaaggttcggcagagtcctgctccagcatcgactgtggagaagctt ggcctgaagaagggcccccgcaaggcgtttgacttgtcccagccctccctggagagcctg gctcagctgcgcagccatggcaaagctgcaggcaggattggagttgcgcagaaaaagagg accaaacagatcgaggctcagcgtttgtctgtgaaatacaataaaaaaatgctgatctgc caagaccggcattatccaaggcagacaaagcccaaaagaagtgtgaaaaattatgcagga agtttggagagcagaaacaaagttgccaaagcgtgtgcaaaacctgtggaacaaaagcct cacagtttcgaactggcagctattaaagaatctgttgaaaaccgaagggagaaaaaaaga gaagaggctttttggccttctgccagtgagagaaaatttgagagcctctctgtggaggag gtggcaagtgcctctaaaatgccttgttcttcagactggaacagaaaatgggaggataac agtgtggtggttcctcctgtccctatggattctagtctctcttccactgcacttggagat cagaaagatgagtcttcaggaaaaggttgcactgtcctgcctgagtgcgaggtgaaaact tcaaagcaaaatggttgtaaatcagatgaaagcagtgatgaaggtgatgataatctgttt ttaacccagttagatcctgtggatatggagttatgttctcaggaggaaagtgttcaagat gctgttataggtagtaagaccccagaggaaatggatgttgatgaaagtcttcagcagaat gaaccctcagctgttgtgaaatgtaaggacaaagactgtatggaacaggtggaaaaacct ggagaatactgcagtaaacacccagccaccagcccaggagcagaccacgtctttgccaag ccttctctcctgccacctaaaataagaaagccttccactgccaaaattttcagcacaaca agttcttcacggaacgcagccttcagcaaagatctcgaagatgtcagaaagttgccccca ccttcaaaaagcaaagtgaatgcggccagagcggcggtggtcaggccaccaccatatcca aaacctgcaccagctggaaacccaacgtgcagatctccaagtgtcagtaatgtacctcaa ccccttggttccaataatgttctccagtcacaaaatagacaccatgacaatgcttcaaat attttcaggggtcctggccgagaaacctactcctcttttcttggcgctcagcagcgcgat tacagcatttttgttaaccaagtcctgaagtggacttatgaaatgtttgcgaacttcagc ctctttggaactccaaataatcttctgcagtccatagtagcctctgttcctgtcaaattt cagggctacaacgactattttaatacattttttcccttgatgatgctcaatgcctttgaa acactggcacaggaatgggtagaaaaccagaaagcaaaagagaaaagttactgcttctac ttacagagcttttctgctgacatgaatacagcgcattttacagctcatctacgagagagt gatttggcgaggcagcttcatccaaaggaggatgacttaatccttttggtggtccacaag gagaaggacgcttttggggaggaaagtaggctggagaaccccatagtgaatcatgttggc ctcgtgacacgattttctcgtgcatctggctacgcaaatagacaaaaagagcagcaaact gcctgtcatcttactgtgcaaacccaaggcaatttgtcattcctcatccataagcaagtg aagtgtgtggtggttggctccctggtgaccacacacagaaagttcaaagctctgctgctg ctgagcaggagccccctggctagacccatcatgaatccaagttataatgacttctgtccc agagatctgcctgttgcctcaggaagtgctgtgtcatatatgaatgaatacaatgaagat caaaagagagccattgagacagcttatgccatggtaaagcaacacccaggacttcccaag atttgccttatccatggaccacctgggacagggaaatcgaaaaccattgtaggactcctg tcccgtgttttgagagaaaacactaggaatgagaaaacagctcagaaaaaaaattccaag attaagccaaaccgttttctggtttgtgcaccatcaaatgctgctgttgatgaactcatg aaaaagatcatcgttgcatttaaggaaaaatgccaaaacaaacaggagcctttgggaaat tgtggtgatatcaaattagtgcgacttggtgctgaaaaatcaatcaacaacgaagtccgg ggattcagcctggataagcaagttgaacacagaatgaaacgaaagccaggtgactgtgac caggacattcagaagaagaaagaagctctggatgagaagctggacaggctctctcgagag cgtgccatgcacaaatgtgagaagagagagaatcaaatgttaaatgatgaaattggcaga cttgcaaaggagagacaacaactcgcttctcagctgaaggaggttcgggggcactcccag aaggtgcaggcagacatcatcctggagtctgacatcatctgctgcacgctgagcaccagc ggggggagcctgctggaatcggccttctcccggcagggcctggatcccttcagctgtgtc atcgtggatgaggcagggcagtcctgtgaggtggaaacactgattccactgatccatcgc tgcaataaacttgtcctcgttggagatcccaaacagctccctcctactgtcaaatcagta aaagctcagcagtatggctatgaccagtctttgatggcccgtctgcagaggcacctggag gagcaagtgcagaggaacgtgctgcgcagcctgcctgtggtgcagctgacagtgcagtac aggatgcacccagacatctgcctcttcccatccaactatgtttatggcaagactctaaaa actgccaagtcagtagaggagaacagatgttcttcagagtggccattccagccctacctg atttttgatgtagctgatggtcgtgaggagcgagacaaggactcttacagcaatcctcgg gaagtgaagctggtgatggagttaattagaacaattaaagaaaaaaggaatgatctgggc cttcgtcgcattggaataattaccccttacagtgcacagaaaaagaaaattcaggaacaa ctggacagtgcgtttaagaataacagcccaggagaagtggacaccgtggatgccttccag ggccgagagaaggattgcatcatcgtgtcctgcgtgcgggcaaacagctccgagggctcc gctccggcgtatgtgcaggcaaacaagggatccattgggtttctggcaagcctccagcga ctgaatgtcaccatcacccgagcccggttcagcctcttcatcctgggccggctgcagacg ctcatggaagataagaactggaatcacttgattcaggatgctcagaaaagaggtgccatt attaggacaacagaaaaaaattacaagaaagaggctctgaggattttgaagcttaggcca ccaggacaatcgccagccaaaggaggagcgatgacatctcctgtggtgcaggctggttct tctagtggcaagaggaatgatcctggaaattctgggaatggcccacaggaacttgctgct ggccctggccatgcagtgccccaaggaaaccgagggcccactccagctgcagattccaga agaggcagtgctcctgcatccatgggagctccagctgcagattccagaagaggcagtgcc cctccatctgtgggagctccagctgcagattccagaagaggcagtgcccctccatctgtg ggagctccagctgcagattccagaagaggcagtgctcctgcatctgtgggagctgcagct gcagattccagaagaggcagtgcccctccatctgtgggagctccagctgcagattccaga agaggcagtgcccctccatctgtgggagctgcagattccagaagaggcagtgcccctcca tccgtgggagctgcagctgcagattccaggaggggcagtgctcctgcacctttgggagct gcaacacttgctgccaatccagagaaaccacgggacccaaggctggcgagcctggccagt cgaactgaagccaaaggcaaggagcagcccttgagagacggccatcagtcagcccagagc aacccaggatcgacaccacagcgaggcctggatgtgtcctcagctgccagggatcacatt tgcagaacagaaaatgccaagaaggcccagcagacagcaggacagtgcagtgtgctcccc gcagcccctcacacagctcagcacaagggtgaccggggagcagctgtgcccaaaagcggt tccaaagcggttcagagcagcagcggtgagtggaacaaggactctcatggtttatcaagg agaccatcccaggaatcaccagagaacagagaatcaagctctgccaagagaagaaagatc tttccctga

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