Hirundo rustica (Barn swallow): 120761823
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Entry
120761823 CDS
T09369
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120761823 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120761823 (PRPF4)
Spliceosome [BR:
hrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120761823 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
120761823
NCBI-ProteinID:
XP_039939440
LinkDB
All DBs
Position
20:9812726..9821621
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AA seq
529 aa
AA seq
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MATARAPAARGGARPPEPPKAKPAEEGEAPPAKRAPIFYGSLEEKERERLAKGETGLLGK
EGMKAAMEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATVSLDKKD
ISLASCAADGSVKLWNLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEPNHGNFLLTGAYDNT
AKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcgggcaccggcggcgcgcggcggggcccggccccccgagccccccaag
gccaagcctgcagaggagggtgaggcacccccggccaagcgggcgcccatcttctatggg
agcctggaggagaaggagcgggagcgcctggccaagggcgagacggggctgctcggcaag
gagggcatgaaggctgccatggaggctggcaacatcaacatcagcagcggggaggtgttt
gacctcgaggaccacatgagcgagcgccaggccgaggtgctggcggagttcgagcgccgc
aagcgcgcccggcagatcaacgtctccacggatgactccgaggtcaaggcctgcctgagg
gccctgggcgagcccatcacgctcttcggagaggggcctgcggagcgcagggagaggtta
aggaacatcctctcagtggttggcacagacgccttaaaaaagaccaggaaagatgatgac
aggtcaaagaagtccaaagaagagtatcagcaaacctggtaccacgagggcccacgcagt
ctgaaaacagccaggctgtggctggccaactactccctgcccagggcagcgaagcggctg
gaggaggcccggctgctcaaggagattcccgaggccaccaggacatcccagaggcaggag
ctgcacaaatccctgcggtccttgaataacttctgcagtcagattggggacgatcgcccg
ctgtcctactgccacttcagccccaactccaaactcctggccacggcctgctggagtggg
ctgtgcaagctctggtctgtgcctgactgcaacctggtccacaccttacgaggacacagc
accaacgtgggggcaatcgtgttccaccccaaggccacggtgtccctggacaagaaggac
atcagcctggcctcgtgtgcagccgatggctccgtcaaactctggaacctggaaagtgac
gagccggtggcagacatcgagggacacagcatgagagtggcccgtgtgatgtggcacccc
tccgggaggttcctgggcaccacctgctacgatcactcgtggcgcctgtgggacctggag
gcccaggaggagatcctgcaccaggaggggcacagcaagggcgtctacgacatcgccttc
cacaccgacggctccctggccggcacgggaggcctggatgcctttggccgggtgtgggac
ctgcgcacgggccgctgcatcatgttcctggaagggcacctgaaggagatctacgggatc
aacttctccccaaacgggtaccacgtggccacgggcagcggggacaacacctgcaaggtg
tgggacctgcggcagaggaagtgcatctacaccatccctgcccaccagaacctggtcacc
ggcgtcaggttcgaacccaaccacgggaatttcctgctcacgggcgcctacgacaacacg
gccaagatctggacccaccctggctggtctccactgaagacactggcggggcacgagggg
aaggtgatgggcctggacatctccctggatgggcagctcattgccacctgctcctacgac
agaaccttcaagctctggacagccgagtag
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