Hirundo rustica (Barn swallow): 120761856 Help Entry 120761856         CDS       T09369                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism hrt  Hirundo rustica (Barn swallow) Pathway hrt04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:hrt00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     120761856  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:hrt00536]     120761856 Glycosaminoglycan binding proteins [BR:hrt00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120761856 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Motif Other DBs NCBI-GeneID:  120761856 NCBI-ProteinID:  XP_039939519 LinkDB All DBs Position 20:complement(8703722..8755260) Genome browser AA seq 1767 aa AA seqDB search MADARADGAGTIPTDKSSDEVNLLDKITLHTPDLSNVSFGYDHSKCRTLEIGQYATLNIP TREAFGDRFADELSVLLKLRYSLKEDTSLVTILSHRSHVLFQIRINPHALVFVTTRRRHY EFPVSFLGDGHWHRVALSISLERLELHVDCRLVDRVSWSNYFGMGVNTEGLIIIGGLIES FEIPFKGALQQLTFVMGDPAAAAEHCHSHNSTCPGSSSLSRAPWELPTAWAEVPKETSEI QDSSAQDSSLSSSDLALGPPWPWEDAQGTLNLQPDGSALASLSAHEMPSAEEEGEEEEEE GSLSIEDEGFELLNFTYNKVTSPGRPALRRSSGASVKPPRAAKKERGSDPREENVTTEKL SWDAGTRRLPPGKARLEPITRVSPSPPRGAAPKGNVPKGPPRAGAVLGVPQPPPGAGHPG LWVAQQGCVKPGPPGLPGPPGLPGCPGRRGLAGPKGDKGFPGAVGRMGPPGDPGPAGTPG VPTIVLWRNSREDWLSFTQSSFYQLLHAGWPRKPGAPGPPGHPGKTGAPGPCGAPGEPGE KGQRGYAGEPGLQGLPGRVGYPGSDGFPGLDGKPGPWGLPGEQGLQGFQGDRGLAGDKGE EGFLGDPGPAGDKGEKGVKGVKGENGLPGAAGLQGMAGLKGAVGFQGPAGPEGEGGSVGP PGPAGPMGEPGQAGSVGCRGINGSQGELGPPGLPGPRGPKGPQGLQGRRGSPGPRGSQGP AGLEGSTGPKGDTGTDGAPGVRGQLGQQGPGGFLGLPGPKGPQGERGCRGPDGAKGDLGA RGGKGARGAQGAKGPPGTRGQGGLQGFPGPRGAAGPRGPDGEEGQIGPAGLNSSEGPKGC QGPDGAKGTPGPRGARGRVGQRGLVGVPGLPGSRGVPGAEGAEGKPGTQGHPGIVGSPGR RGPLGFAGLPGGRGHAGTPGSIGSPGKPGPDGDPGSLGPKGLPGKPGLEGPQGPVGSYGY PGPAGDRGRLGRRGDKGERGAQGPPGFPGKAGPKALPGPPGPRGAPGSQGRTGDPGPRGL PGLPGVPGTRGLDGIPGKPGLGGERGAPGAAGAAGPAGYPGREGPNGREGPAGMRGEKGE VGDPGGAGVGGLDGEQGPPGPPGAEGQLGPKGEQGEAGTRGAPGIRGSPGEPGDKGTEGP PGRPGKQGQEGDTGDTGDPGEPGLRGRKGNAGPRGLPGIPGPGAATGKIGGKGQKGEKGQ EGLLGQGGVTGAAGPAGARGWFGGTGLRGPPGLDGPEGEKGDPGPRGVDGPAGAAGFQGL AGDDGAKGDGGKPGPVGSQGAQGLAGAPGLRGSTGHEGARGVLGTKGQPGRQGTLGPPGE AGVTGLSGTEGLVGAKGEPGKPGKPGQTGSPGRAGPKGWKGCKGEKGDAGRAGEPGLPGE AGRRGKRGKVGQQPPRGPWGHKGYPGDKGLPGPQGPQGPYGIPGLKGIKGDPGPKGHKGE KGSKGDLGQQGDDGFKGKPGPHGVPGRPGPKGKQGDTGPPGPRGHPGIPGTPGLSGPKGL RGFPGLPGPRGTPGMPGLAGPPGPSGPALTLSQEELQHLIYSSSHLNYTVVWALLDTLSR ELQALVEHPNGTKANPATTCKELLLAHPGLPDGQYYIDPNQGCPQDALLAFCNFTAGGET CIAPVHNQVPIKAWLSTYSSENTFEWFSTLPGGFLLEYAGASPVQLRFLRLHSHRAAQKV SYSCRPAPERGRPQPHKEIRFLADSRDRSYAASLQGCLLDNESSITDTIFQFSTEELRLL PLRDLAVFHNGDASHQFGFTVGPVCFS NT seq 5304 nt NT seq  +upstreamnt  +downstreamnt atggcagatgctcgtgcagatggtgctggcacaattcccactgacaaatcatcagatgag gtgaacctgctggacaaaatcactctccacaccccggacctcagcaatgtttcctttggc tacgaccacagcaagtgcaggaccctggagatcgggcagtacgccaccctcaacatcccc accagggaggcctttggggacaggtttgcagacgagctgagcgtgctgctgaagctcagg tactccctgaaggaggacaccagcctggtgaccatcctcagccaccgcagccacgtgctc ttccagatcaggattaacccccacgccctggtctttgtcaccacgaggaggagacactac gagttcccagtgtccttcctgggcgatgggcactggcaccgggtggctctcagcatctcc ctggagcggctggagctgcacgtggactgtcggctggtggacagagtgagctggtccaac tattttgggatgggggtgaacactgaggggctgatcatcattggaggcctcatcgagtcc ttcgagatcccctttaagggcgctctccaacagctgaccttcgtgatgggagacccggca gccgccgccgagcactgccacagccacaactcgacctgcccaggctcctccagcctcagc agggccccttgggagctcccaacagcctgggcagaggtgccaaaggaaaccagtgaaatc caggattcatctgctcaggactccagcctcagcagctcagatttggccctggggccacct tggccatgggaggacgcccaggggaccctcaacctccagcctgatgggagtgccctggct tccctctctgctcacgagatgccatcagctgaggaggagggggaggaggaggaggaggag ggaagcctttccattgaggatgaaggctttgagctgctgaacttcacctacaataaagtc accagccccggcaggccagcgctcaggagaagctcgggagcgtctgtgaaaccccctcga gcagccaagaaggagcgtggctctgacccccgcgaggagaacgtcaccacggagaagctg tcgtgggacgcgggcacgcggcggctcccgcccggcaaagcccgcctggagcccatcacc agggtgtccccatcgcccccccggggggctgctcccaaaggaaacgtccccaaaggtccc ccgagggcaggggcagtgctgggtgtcccgcagcctccccctggagcaggacatcccgga ttgtgggtggcacagcagggatgtgtgaaaccgggaccgcccgggctgccgggaccgccg gggctgccgggctgtccgggcagacggggactggcgggacccaaaggagacaaaggattc cccggggccgtggggcgcatgggaccccccggtgaccccggccctgctggcacccccggg gtccccaccatcgtcctctggaggaactccagggaggactggctgtccttcacgcaatca tcattttaccaactcctgcacgcgggctggccgaggaaacctggagctcccgggcccccg ggacatcctgggaaaacaggagcccctggaccctgcggagcaccgggagagccgggggag aaaggccagcgggggtacgcgggggagcccgggctccagggcttgccaggacgcgtggga taccccggctccgatggttttcctggcttggatggcaaacctgggccgtgggggctgcca ggggagcagggcctccagggcttccagggtgaccgagggctggctggggacaagggagaa gagggtttcttgggagaccctggaccagctggggacaaaggagagaagggagtgaagggg gtgaagggagagaacgggctgccaggtgctgctgggctccaggggatggcggggctgaag ggtgccgtgggcttccagggccctgcagggccggagggagaaggaggctcggtgggtccc ccgggccctgctggccccatgggagagccgggccaggcggggtccgtgggatgccggggc atcaatggctctcagggggaattgggccctcccgggctgcccggcccccgcggccccaag ggaccccagggcttgcagggcaggcgtggctcccccggccccaggggctcccagggtcca gcagggctggagggatccactggtcccaaaggagacacgggtacagacggcgcccctggg gtgaggggacagctgggacagcagggccctgggggttttctgggcctgccaggtcccaaa ggcccccaaggagagcggggctgccggggtccagatggagccaagggagatctgggagcc agaggaggcaagggcgcacgaggagcacaaggagccaaagggcctccagggacccggggc caggggggcttgcagggcttccccggcccccgaggggcggcggggccgcggggaccagac ggggaagaaggtcagattggccctgcagggctgaacagcagcgagggacccaagggatgc caaggacctgacggcgccaagggaacgccgggaccacggggagcccggggccgtgtgggg cagcgtgggctggttggagtccctggactgcccggctcgcggggcgtgccgggagcggag ggcgcagaaggaaagcctggtacacagggccacccggggatcgtgggcagcccagggagg aggggaccactgggatttgctggtttgccagggggccgtgggcacgccggaactcctgga tccataggctctccaggaaagcctggacctgatggagaccccggttccttgggccccaag gggctgcccgggaagcccggcttggaggggccacaaggacctgtgggctcctacggctat ccaggacctgctggagaccgtgggaggctgggacgcaggggagacaagggagagagggga gctcaaggacccccaggatttccagggaaagctggcccaaaggccctgccaggtccccct ggtcctcgtggtgctcctggctcccagggcagaacaggtgacccaggtcctcgagggctc ccagggctgcctggcgttcctggcacaagagggctggacggcattcccgggaagcctggc ttgggtggagaaagaggcgctcctggagcagctggtgctgctggcccggctgggtacccg ggccgggaaggtccaaacggacgtgaagggcctgcagggatgagaggagagaagggtgag gtgggagatcccgggggagccggagtcggcgggctggatggggagcagggaccaccagga ccgccgggagcagagggtcagctggggcccaagggcgagcagggagaggcaggaacccgt ggagctccgggcatcagagggagccctggggagccaggggacaaggggacagaggggcca ccgggacggccggggaagcaagggcaggagggtgacactggtgacaccggagacccgggt gagccaggactgcggggacggaagggcaatgctggccccaggggcctgcctggaattccc ggtccaggagctgccacggggaaaatcggagggaaaggccagaagggagagaagggccaa gaaggtttgctgggccagggcggtgtcaccggagctgcaggacctgctggagccagagga tggtttggtgggacaggactccgaggtcctcctgggctcgacggtcctgagggagagaag ggagatccagggccacgaggcgtggatggacctgctggggccgcaggattccagggactg gccggagatgatggagcgaagggagatggtggcaagcccggcccagtgggctcgcagggg gctcagggactggcaggtgcccctgggctgcggggctccaccgggcatgagggagccaga ggagtgctgggcaccaagggacagccaggccggcaggggactcttgggccaccgggcgaa gccggagtcaccgggctgagcggcactgagggcctggtgggtgcaaaaggggagccaggc aagccgggaaaaccgggacaaacggggtctcctggacgagctggtcctaaaggatggaaa ggctgcaaaggagaaaagggcgacgcgggccgggcaggggagccggggctcccgggagaa gctggcagacggggcaagcgtggcaaggtgggccagcagcccccgcggggtccctgggga cacaagggctacccaggtgacaaaggacttccaggaccccaaggcccccagggaccctat ggcatcccggggctgaagggcatcaaaggagaccctggaccgaaaggacacaagggcgag aagggcagcaagggtgacctgggccagcaaggggacgatggcttcaagggcaagccagga ccccacggtgtccctgggaggccgggacccaagggaaagcagggtgacactggcccccct ggcccacggggacatcctggaattcccgggacaccgggcttgtccggacccaaagggctg agaggcttcccgggcctgccaggccccaggggcacaccgggcatgccgggtctggccggc ccccctggtcccagcgggcctgcactgacgctgtcccaggaggagctgcagcacctcatt tattcctccagccacctgaattacaccgtggtctgggctctgctggacaccctgagccgg gagctccaagccctcgtggagcatcccaatggcaccaaagccaaccctgccaccacctgc aaggagctgctgctggctcaccccggcctgcccgacgggcaatactacatcgaccccaac cagggctgcccccaggacgcgctgctggccttctgcaacttcacagccgggggggagacc tgcatagcccccgtccacaaccaggtgcccatcaaggcttggctgagcacctacagctct gagaacacctttgagtggttcagcaccctgcccgggggtttcctgctggaatacgcgggg gccagcccggtgcagctccgcttcctgcgcctgcacagccaccgcgccgcgcagaaggtc tcgtactcctgcagaccggcccccgagcgcggccggccccagccccacaaggaaatccgc ttcctggccgactcccgggatcgcagctatgcagccagcctgcagggctgcctgctggac aacgagtcctccatcactgacaccatcttccagttcagcacggaggagctgcggctgctg ccgctgcgggacctggctgtcttccacaacggcgacgcctcgcaccagttcggtttcaca gtcggaccagtctgcttcagctga

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