Hirundo rustica (Barn swallow): 120762274
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Entry
120762274 CDS
T09369
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hrt03036
]
120762274 (CHD5)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120762274 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120762274
NCBI-ProteinID:
XP_039940445
LinkDB
All DBs
Position
22:3918124..3941566
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AA seq
1964 aa
AA seq
DB search
MRGPAAPRELLDDADNEEDVSVCPRELLSLLSPEEDDGVLEGLDEFFAEDQVVVQKKKKF
KKLKDGKAAKIKRRKKEGSNDEMSENEEEIEEKSESEGSDYSPNKKKKKKLKDKKEKKPK
RKKKDEEEDDNEDGGLKEPKSSAQLMEEWGLDDVDYVFSEEDYHTLTNYKAFSQFLRPLI
AKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTISPALPASPQH
PALPTVVRKAKTKEGKGPGVRKKIKGSKDGKRKGKGKKMGGLKFRFGGIPSKRKKGSSSE
EEEREESDFDSASINSSSMRSECSAGLGKRGKKRKKKKRIEEGDGYETDHQDYCEVCQQG
GEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEEEEEEEDGGEEEED
DHMEFCRVCKDGGELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRIL
HWAWKEPPAAALPAPLPAADPELALPPPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLE
LYHTVMYRNYQRKNDMDEPPAFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWM
MIHRILNHSFDKKGDIHYLIKWKDLPYDQCTWEIDDIDIPYYENLKLLYWNHRELMLGED
ARPLKKLNKKGKKLKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLR
FSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWA
PDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITID
QAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNF
LTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVEL
SQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNG
SYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG
GITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFS
RAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDI
LKFGTEELFKDDVEGMVSQGQRIAMADAVTPFSDTLSTKGGAATPGMKKKHGGTPPGDNK
DVDDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVERE
IIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDELSD
NQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLKTDRDKPLPPLLARVGGNIEVLGFNAR
QRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFA
DGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLVLEGPESKRSSEVVSSDP
NTPVPASPAHTHTAPGPLADKIEAQLGFHEEKDPVEQKPRKVSDSQVPASAEVESEEHPE
SCDNKERPREEKQEDCEKAEPSSEPLVKDEGIQEQEKPLEKAELSSSPGKGEEKEVKPED
GKEEEKEPSDAQQNADKEEEEEGKKDDKNMNFRFMFNIADGGFTELHTLWQNEERAAMSS
GKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYVILNEPFKSEVHKGNYLEMKNKFL
ARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPAMALNARLAEVECLAESHQHLSKESLAG
NKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGD
PAAQGSFGSAQIFNNNFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccggcggccccccgggagctgctggacgacgcggacaacgaggaggacgtg
tcggtctgtccacgtgagctgctgtcccttttgtccccagaagaagatgatggggtgctg
gaaggattggatgagttttttgcagaagaccaagttgtggtacagaaaaagaagaaattc
aagaagctgaaagatggcaaggctgccaaaatcaagaggaggaagaaggaggggagcaat
gatgaaatgtcagaaaatgaagaggaaattgaggagaaatcagaaagcgaagggagtgac
tattctcccaacaaaaagaagaagaaaaaactgaaagacaagaaggagaaaaagccaaaa
cggaagaagaaggatgaagaggaggatgacaatgaggatggaggtttaaaggagcccaag
agctcagcccagctcatggaggaatggggtctcgatgacgtagattacgtgttctcagaa
gaggattatcatactctgacgaattacaaggctttcagccagttcctcaggcctctgatt
gccaagaagaaccccaagatccccatgtccaagatgatgacggtgcttggtgccaagtgg
cgagagttcagtgccaacaaccccttcaagggcagctcggcggcggcggctgcggcagct
gtggctgcagctgtggagactgtcaccatctccccggcgctccccgccagcccccagcac
cctgccctgcccaccgtcgtcagaaaggccaagaccaaggaggggaagggtccaggtgta
cggaagaaaatcaagggctccaaagatgggaagagaaaggggaaagggaaaaagatggga
ggcttgaaattccggtttggaggaatccccagcaaaaggaaaaagggctcctctagcgaa
gaggaggaacgggaagaatccgactttgacagcgccagcatcaacagctcctccatgcgc
tctgagtgctcagctggcctggggaagagagggaagaagaggaaaaagaaaaagaggatc
gaagagggggacgggtacgagacggaccaccaggactactgcgaggtgtgccagcagggc
ggggagatcatcctgtgcgacacctgcccccgtgcctaccacctggtgtgcctggacccc
gagctggagaaggcccccgagggcaagtggagctgcccccactgcgagaaggagggcatc
cagtgggagccgaaggaggaggaggaggaggaagaggatggtggggaggaggaggaggat
gaccacatggagttctgccgggtctgtaaggacggaggggagctgctgtgctgcgacacc
tgcccgtcctcctaccaccttcactgcctgaacccgccgctgccagagatcccaaacggt
gaatggctctgcccacgctgtacatgccctcccttgaagggcaaggtccaacgcatcctg
cactgggcctggaaggagcctccggccgccgcgctccccgccccgctccccgccgcggac
ccggagctggctctgcccccgccgaaggtgctggagggcatcccggagcgcgagttcttt
gtgaagtgggcaggcctctcctactggcactgctcctgggtcaaggagctgcagctggag
ctctaccacaccgtgatgtaccgcaactaccaacggaagaacgacatggatgagccaccg
gccttcgactacggctctggggacgaggacagccagagggagaagcggaagaacaaggac
ccccagtatgccaagatggaggagcggttctaccgctacggcatcaagcccgagtggatg
atgatccaccgcatcctgaaccacagctttgataaaaagggagacatccattacctgatc
aagtggaaggacctgccctatgaccagtgcacctgggagatcgatgacatagacatcccc
tactatgagaacctcaaactgctctattggaaccacagggagctgatgctgggggaggat
gcacgccctctgaagaagctgaacaagaaagggaaaaagctgaaagaggagaagctggaa
aagcctccagagacaccccttgtggatcccacagtgaagtttgacaagcagccgtggtac
attgatgccacgggaggcacgctgcacccttaccagctggaagggctgaactggctgaga
ttctcctgggcacaagggacggatacaatcctggctgatgagatggggctagggaagacg
gtgcagactattgtgttcttgtattccctgtacaaggagggccactccaaagggccgtac
ctagtcagtgcccccctctccaccatcatcaactgggagcgtgagttcgagatgtgggca
cccgacttctacgttgtcacctacacgggggacaaggagagccggtcggtcatccgggaa
aatgagttttccttcgaagacaacgccatccgcagcgggaagaaggtgttccggatgaag
aaggaagcccagatcaagttccatgtcctgctcacgtcctacgagctgatcaccattgac
caggcggtgctgggctccatagagtgggcctgtctggtggtggatgaagcacacaggctg
aagaacaaccagtccaaattctttagagtactgaacagctacaagatcgattacaagctg
cttctcacagggactccgctccagaacaacttggaagagctcttccacctgctcaatttc
ttgactccagagaggtttaacaacctggaggggttcctggaggagtttgcagacatctcc
aaggaggaccagatcaaaaagctccatgacctgctgggtccccacatgctgcggcggctc
aaggccgatgtgttcaagaacatgccggccaagacagagctgattgtgcgagtggagctg
agccagatgcagaagaagtactacaaattcatactgacgaggaacttcgaagccctgaat
tccaaaggtggtgggaaccaggtctcgctgctcaacatcatgatggacctgaagaagtgc
tgcaatcacccgtacctgttccctgtggcagccgtggaggccccggtgctgcccaatgga
tcttacgatgggaattctttggtcaaatcttctgggaaactgatgctgctccaaaagatg
ctgaagaagttacgggatgggggtcacagagttctgatcttctcgcagatgacaaagatg
ctggatttgctggaggatttcctggagtatgaaggctacaagtacgagcggatcgacggg
ggcatcaccggcggcctgcgccaggaggccatcgacaggttcaatgctcctggggctcag
cagttctgcttcctcctctccacccgtgccggtggtctgggcataaaccttgctacagcc
gacactgtcattatttatgattctgactggaatccccacaatgacatccaggcgttcagc
agagctcaccgcatcgggcagaacaagaaggtgatgatttaccgcttcgtgaccagggcc
tctgtggaggagcgcatcacccaggtggccaaaaggaagatgatgctcacccacctggtg
gtccgcccggggcttggctccaagtcgggctccatgaccaagcaagagctggatgacatc
ctgaagtttgggacagaagaactcttcaaggatgatgtggagggcatggtgtctcaggga
cagcggattgccatggcggatgccgttacccctttctcggacacactgtcaacaaaaggg
ggtgcagcaacccctggcatgaaaaaaaagcatggtggcacccctccaggtgacaataag
gatgtcgatgacagcagtgtgatccactacgatgacgctgccatctcgaagcttttggac
cgaaaccaggatgcgactgacgacacggagctgcagaacatgaatgagtatctcagctcc
tttaaagtggctcagtatgttgtgagagaagaggacggtgtggaggaggtggaacgggag
atcatcaagcaggaggagaacgtggaccctgactactgggagaagctgctgcggcaccac
tatgagcagcagcaggaagatctggccaggaacctggggaaagggaagagaatccgcaag
caggtcaactacaatgacacctctcaggaggaccaagagtggcaggacgagctctctgac
aaccagtcagagtattccatcggctctgaggatgaggatgaagactttgaagagaggcca
gaaggccagagtggcagaagacaatcccggagacagctgaagactgacagagacaaacct
ctccctcctttgctggcaagagttggggggaacatcgaggttctgggcttcaacgcccgg
cagcgcaaggcgttcctgaatgccatcatgcgctggggaatgccaccccaggatgccttc
aactcccactggctggtccgggatctgcgagggaagagcgagaaggagttcagggcgtac
gtgtctctcttcatgagacacttgtgtgagcccggggcggacggtgctgaaacctttgcg
gacggcgttccccgggaagggctgtcacgccagcacgtgctgactcgcatcggggtcatg
tcactagtaaggaagaaggtccaggagttcgagcatgtcaatgggaagtacagcacccca
gacctggttcttgagggcccagagagcaagagatccagtgaggttgtgtcttcagatccc
aacacacctgtcccagccagtccagcacacacacacacggcaccagggcctcttgcagac
aaaatagaagcacaactgggtttccatgaggaaaaggaccccgtggagcagaagcccagg
aaggtgtctgacagccaggtgcctgcaagtgccgaggtggagagcgaagagcacccagaa
agctgtgacaacaaggagaggccaagggaagagaagcaagaggattgtgaaaaggctgag
ccttcttctgagcccttggtcaaagatgaggggattcaagagcaagagaagcctttggag
aaggcggagttgagcagcagcccagggaagggggaggagaaagaagtcaaaccagaggat
ggcaaggaggaggagaaggagccgagtgatgcccagcaaaacgctgacaaagaggaagag
gaggaaggaaagaaggatgacaaaaacatgaacttcagattcatgttcaacatcgctgac
ggtggcttcacagagctgcacacgctgtggcagaatgaggagagggctgccatgtcctct
ggcaagatctacgacatctggcaccgccgacacgactactggctgttggcaggaatcgtc
actcatggctatgcccgctggcaggacatccagaatgacccacgctacgtgattctgaac
gagcccttcaagtcagaggtacacaaggggaactacctcgagatgaagaacaagttcctt
gcccggcggtttaagttgctggagcaggccctggtgatcgaggagcagctgcggagggca
gcgtacctcaacatgacccaagaccccagtcacccggccatggcactgaacgcacggctg
gcagaagtggagtgccttgccgagagccaccagcacctctccaaagagtccctggctggg
aacaagcctgccaacgctgtcctgcacaaggtgctgaaccagcttgaggagctgctgagt
gacatgaaggctgatgtgacacgcttgccctccatgctgtcccgcatcccgcccgtggct
gcccggctgcagatgtcagagcggagcatcctcagccgcctggccacccgtggaggggat
ccagctgcccagggctcctttggctctgcccagatcttcaacaacaactttgggccaaat
ttccgtggtcctgggccaggtgggattgtcaattacagccagatgcctctgggaccctac
gtgactgatatttag
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