Hirundo rustica (Barn swallow): 120762275
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Entry
120762275 CDS
T09369
Symbol
NPHP4
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-4
KO
K16478
nephrocystin-4
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hrt03037
]
120762275 (NPHP4)
Cilium and associated proteins [BR:
hrt03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
120762275 (NPHP4)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3866
Motif
Other DBs
NCBI-GeneID:
120762275
NCBI-ProteinID:
XP_058279302
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All DBs
Position
22:3964118..3982347
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AA seq
1362 aa
AA seq
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MLTFPTFPLLCLPLAWRQVLQQCMKLSVPMYLIWASLRKQELYLSPKCVLSFGDAELACP
XASPEPVCCTLQGAEYQLRLSLFDATYHHFFGKTWRSSWQTAGAAPPRSARATFHEVVYF
HTSLNHPGIAAVVEVVRTAGKRDGSSQHLSCGFGIIPLFHGRPEATDLATEDRALKLYHG
TPRALLHPRFQNPVEKNKYMTVMEKSHLQYALKSHQPLEAVFHLLPENLLISGMQTVPGL
LPAHGDRGDCLQKPRLMKTITCYLEGLFIQLYPSLEEFEEELLDLLNSDRLLQANTAPDG
EEVVVRERRLHVGVHNGLRFVRTPQVAVLVPDTELSPGGCQGVPSSRARDAGQVLVLRSR
IQLSEVVPHPAFRVCFQLEYVFCSTGRAGVKALSGSARREAADMRSVRWAVWSPVLGTGD
TDVVLPLRGGARRGPCQALVYRSPPNSRQGKHVESGTVQFHVSTDSEEHLVTAAEILCKD
RDESKQPPTPSLRVPTPRRVPVSPQGPGLSVSQLVASPQGTGQTLQQDGGITHLEANLGS
PDTEPCASDQLRALPFTPLQLPMAAVGLQACSSHVSLSRAALARLHAAGFPDILDRNQEP
VEISEPVELGTFNLRLEEADPLQGNEIVLQFLAFGRDAQGSMEGPQPRTVFLTFQFYRFP
PVTTPRLQLVSTDGGMATGLAVPAQLLVRVNEDGTLTRPPGLQLKYMVDPAFLRPGEHRW
FLRYLAEHSLQIDVWDGDSLLHVGSAAIKLEPLLRQGQTAVRTYHELEVATTEYEPDGTV
MGREALRHGALRPLGVRVAVRGRLHLCLANVGHPCEETPGQLASYSHIVTAPDSTVTTPG
GSWRSLNTPGGGRTVWARRLVDVDNELEAALRNRRPEGWPKQRAWDLQVIDAYRDHIKGE
SIYQMLSQAITATRTVHAVLGTAEFFEFALKNPYGVQHTVTIEVDHPDLSVILDPREWRH
FKELTKSVTPVEEDMFHLRDDLKPQVYLRPSETVHIPFKYQTFSADPAVVAAQGPAGLGT
GANENTRSLGKSGAKQTKLIQVSFQVSGGKPIALLRVKVEPQPHVVDQTFRFYHPELTFL
KKTIRLPPWHTLPGTPVGVPGGQPEMFVRCSDPDIICETKSLGPGEPQDIFLKVAGGPSP
QIKKFFVAIYMDAWLAAPAQIWQFYLHSLQRLDVACTAGQLTRLSLLLRGTAASRRVQAF
TSHPQELEVDPKGAFLLPANGIQDLYIGVRPRRAGSKFIYLNLVDVESHQLVSSWLLCLS
CKQPLISKAFEISLPAGGGKGCNKRITYTNPYPSPRLYFLCTNRPDLLQFKEDSFEVAGG
EVYTIGLRFAPSQTVGEEEILIHINDHEDKNEETFCVKVLYQ
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgctcactttccccacttttcctttgctctgtctgcctctggcttggaggcaggttctg
cagcaatgcatgaagctgtctgtgcccatgtacctgatttgggcatcccttagaaaacaa
gaattatatctctcaccgaagtgtgttctgagctttggggatgcagagctggcctgtccc
tgagcatccccagagccggtgtgttgtaccttgcagggagccgagtaccagctgcgcctc
tccctttttgatgccacctaccaccacttctttgggaagacgtggaggagcagctggcaa
actgctggtgctgccccgccgcgctcggccagggcgacgttccatgaggtcgtttatttc
cacacctccttgaatcaccctggcattgctgctgttgtggaagtggtaaggacggctggg
aaaagggatgggagctctcagcacctttcctgcggctttggaatcatccccctcttccac
ggcagaccagaggcgacagacctggccaccgaggacagagcgctgaagctgtaccatggg
acgccacgtgccctgctgcacccacgcttccagaaccccgtggaaaagaacaaatacatg
acagtgatggagaagagccacttgcagtatgctctgaagtcccaccagcccctggaagca
gtatttcacctccttcctgaaaacctgctgatatctgggatgcagactgttcctggcttg
ctgccagcacatggagacagaggagactgcttgcagaagccccggctgatgaagaccatc
acctgctatctggaggggcttttcatccagttgtacccttccctggaggagtttgaggag
gagctgctggatttattgaacagtgatcgtttactccaggcaaacactgcaccagatggt
gaagaggtggtggttcgggagcggcggctgcacgttggagtccacaatggcctgcgcttt
gtccggacaccgcaggttgctgtgctggtgccagacacggaattgtcaccgggtggctgc
cagggggtgcctagctctagagccagggatgcaggtcaagtcctagtgctgaggagccgc
atccagctgagtgaagtggttcctcacccggcattcagggtctgcttccagctggaatat
gtcttctgcagcactgggagagctggtgtgaaggctctgtctggcagcgcccgccgtgaa
gcggccgacatgcgctcggtgcgctgggctgtctggagccccgtcctgggcaccggtgac
acggacgtggtcctgcccctgcgtggtggtgcccgccgtggcccctgccaagccttggtc
taccggagcccgccaaactcccggcaggggaagcacgtggagtctgggactgtccaattc
catgtttccactgattcggaagaacatcttgtaactgctgcggagatcctatgtaaagac
agggacgagtcgaagcagcctcctacgccatcgctgagagtgccaaccccacggcgtgtg
ccagtctccccacagggaccagggctgtcggtgtcccagctcgtggcctcgccacagggc
acgggccagactctgcagcaggatgggggcatcacccacctggaggccaacctgggctcg
ccggacacagagccctgtgccagcgaccagctgcgggcactgcccttcaccccgctgcag
ctgcccatggctgccgtggggctgcaggcgtgcagttcccacgtgtccctctctcgtgcc
gcgctggcgcgcctgcacgctgccggctttccagacatcctggaccgcaaccaggagccg
gtggaaatctcagagccagtggagctgggcactttcaacctgcggctggaggaagctgac
cctctgcaaggcaatgaaatagtcctgcagttcctggcttttggcagggatgcccagggc
agcatggaggggccacagccgaggactgtcttcctcaccttccagttctaccgtttcccc
ccggtcaccacgccgcggctgcagctggtcagcacggacgggggaatggcgaccgggctg
gctgtgccagcacagctccttgtccgtgtcaacgaggatgggaccctaaccagaccacca
ggcttgcagctgaagtacatggtggatccggctttcctgcggcccggggagcaccgctgg
ttcctgcggtacctggctgagcacagcctccagattgatgtctgggatggagactccctg
ctccacgtcgggtctgctgccattaaactggagcccctgctgcgccagggccagacggcc
gtcaggacctaccacgagctggaggtggccacgacggagtacgagccggacgggacggtg
atgggccgggaggctctgcggcacggcgccctgcggcccctgggtgtccgtgtggctgtg
aggggccgtctccacctctgcctggccaatgttggtcacccatgtgaggagaccccaggc
cagctggcatcctactcccacattgtcactgcaccagacagcactgtcaccaccccaggt
ggcagctggcgctccctgaacactcctggtggtgggaggacggtgtgggcacggaggctg
gtggatgtggacaacgagctggaggccgcactgcgcaatcgccggccagaaggctggcca
aagcagcgtgcctgggacctgcaggtcatcgatgcctaccgggatcacatcaagggagag
agcatctaccagatgctcagccaggccatcacagccacccgcactgtccacgctgtgctg
ggcacagctgagttcttcgagtttgccctgaagaacccatacggcgtccagcacaccgtg
accatcgaggtcgaccaccctgatctcagtgtcatactggacccgagggagtggcgccac
ttcaaggagctgaccaagagtgttacaccggtggaggaggatatgttccatctgcgtgat
gacctcaagcctcaggtctacctgcgccccagtgagactgtgcacatccccttcaaatac
cagaccttctctgcagatcctgctgtggttgcagcacaggggccggctgggctgggcacc
ggtgccaatgagaacactcgctcccttgggaagagcggggccaagcagacaaagctcatc
caggtctccttccaggtgagcggggggaagcccattgcactcctgcgggtgaaggtggag
ccgcagccccatgtggtggaccagaccttccgcttctaccacccagagctcaccttcctg
aagaaaaccattcggctgcctccctggcacaccctccctggcacgccagtgggggtgcca
ggcgggcagcctgagatgttcgttcgctgcagtgaccccgacatcatttgtgaaaccaaa
tccttggggcctggcgagccacaggacatcttcctcaaagtagccggaggaccaagcccg
cagatcaaaaagttctttgtcgctatttatatggacgcctggctggcagcacctgcccag
atctggcagttctacctgcactcgctgcagcgcctggacgtcgcctgcacggccgggcag
ctcacccgcctctcgctgctgctgcgtggcaccgcggcctcgcggagggtgcaggccttc
acctcccacccccaggagctggaggtggatccaaagggtgccttcctccttcctgccaat
ggcattcaggacctgtacatcggcgtgaggccacggcgggctggcagcaagttcatctac
ctcaacctggtggatgtggagtcccaccagctggtgtcctcctggctgctctgcctgtcc
tgcaagcagcctctcatctccaaggcctttgagatctcgctgcctgcgggaggtgggaaa
ggctgcaacaaacgcatcacctacaccaacccctacccctcgccccgcctctacttccta
tgcaccaaccgccccgacctgctgcagttcaaggaggattccttcgaggtggccggaggg
gaggtgtacaccatcggcctgcgcttcgccccgagccagaccgtgggggaggaggagatc
ctgattcacatcaacgaccacgaggacaagaacgaggagaccttctgcgtgaaggtcctg
taccagtga
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