Hirundo rustica (Barn swallow): 120762488
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Entry
120762488 CDS
T09369
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04140
Autophagy - animal
hrt04148
Efferocytosis
hrt05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120762488 (VPS11)
04148 Efferocytosis
120762488 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120762488 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120762488 (VPS11)
Membrane trafficking [BR:
hrt04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120762488 (VPS11)
Hops complex
120762488 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
TPR_GEMI5
zf-C3H2C3
zf-RING_5
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_3
zf-RING-like
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
120762488
NCBI-ProteinID:
XP_039940865
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All DBs
Position
23:7025653..7035855
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AA seq
929 aa
AA seq
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MAAYLQWRRFVFFDRETVREPSGPDGTGAKPFALPPGIAVCDSGRGSLVFGDMEGQIWFL
PRSLQLSSFQAYKLRVTHLYQLKQHSILVSIGEDEEGINPLVKVWNLEKRDGGNPLCTRI
FPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGSYPVTG
LAFRQSGKTTHLFVVTTENIQSYMLSVKDYPHLELDTHGCGLRCSSLSDPSQDLQFIVAG
NECVYLYQPDECGPCFAFEGQKLIVHWYRGYLIIVSKDRKTSPKSEFAGNEAQNSDKQVL
NIYDLCNKFIAYSSIFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFE
MAINLAKSHHLDSDGLSEIFRQYGDHLYNKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQ
RIHNLTAYLQMLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVHFDVETAIKV
LRQAGYYSHAVYLAEKHEHHEWYLKIQLEDIKNYQEALHYIGKLPFEQAESNMKRYGKIL
MHHVPNETTELLKILCTDYRPLGGNEGPGMLEGKKANSEEFIPVFANNSRELKAFLEHMT
EVQADSPQGVYDTLLELRLQNWAHEQDEQLKEKLHSEALTLLKSGRFKTVFDKALVLCQM
HNFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALGYFARKEE
NCKEYIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSCQIEQDEQR
IQKYQEETTRIRLEIEELKASPKIFQKTKCSICTSALELPSVHFLCGHSFHQHCFESYSE
SDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDGFSVVADYFGRGVFNKLTL
ITDLPSGKTATTIEAGLQRELLIHTKRST
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctacctgcaatggcgccggttcgtcttctttgacagagagacggtgagggag
ccgtcggggccggatggaaccggtgcgaagcctttcgcgctgcccccgggcatcgcagtc
tgcgactcgggccggggaagcctcgtgttcggagatatggaaggtcagatttggtttttg
cctcggtcccttcaactcagcagtttccaagcttacaagctaagggtgacgcatctgtac
cagctgaagcagcacagtatcctggtatctattggtgaggatgaagagggtattaaccct
ttggtgaaagtctggaacctggagaaacgagatggtggtaatcctctttgcacacgaatt
tttccagcaataccaggtaacaagcccacagttgtatcctgcctaactgtccacgagaat
cttaatttcatggctattggttttgcagatgggagcgttgtacttactaaaggagacatc
actcgagaccggcatagtaagacccagatcctacatgaaggcagttatccagttactggc
cttgcttttcgacagtctggcaaaacaacacatctatttgtggtgaccacagagaacatc
cagtcttatatgctttcagtgaaagactatcctcacctggagctggacactcatggttgt
ggactgcgctgttcatctctcagtgacccctctcaggatctccagttcattgtggcagga
aatgaatgtgtgtacctttatcaaccagacgaatgtggcccctgctttgccttcgaggga
caaaagctgattgtccactggtatcgggggtacctcatcattgtctccaaggaccgaaag
acttccccaaagtcagaatttgctgggaatgaggcacagaattcagacaaacaagtcctg
aatatctatgacttgtgcaacaaattcattgcttacagctcaatctttgatgatatagtg
gatgtcttggcagagtggggttctctctatgtactgaccagagatgggaagatccatgta
ctgcaggagaaggatacacaaaccaaacttgagatgctgttcagaaagaacttatttgaa
atggccattaacctggccaagagccaccacttggacagcgatggtttgtcagagattttc
cggcagtatggcgatcatctctataacaagggaaaccacgatggagccatccagcagtat
atccgaactataggcaaactagaaccatcttatgttattcggaaattcctggatgctcag
cgtatccacaacctcactgcttatctacagatgctccatctgcagtccctggccaatgca
gaccacactacacttctgctgaattgctataccaaactcaaagacagctccaaactggaa
gagttcattaagacaagtgagagtgaggtccactttgatgtggaaacggctatcaaggtg
cttcgccaagctggttattactcccacgctgtgtacctggcagagaagcatgagcatcat
gaatggtacctcaaaatccagttagaggacatcaagaactaccaagaggctttgcactac
attggaaaactgccctttgaacaggcagagagtaacatgaaacgatacggtaaaatcctg
atgcaccatgtccctaatgagaccactgaattgctgaagatcctttgcactgattaccgt
cccttgggaggtaatgaaggccctgggatgctggaaggaaaaaaggctaattcagaggag
ttcatcccagtctttgcaaacaactcccgagaactgaaggcttttctggaacacatgact
gaggtgcaggctgactctccacagggtgtctatgacactttactggaacttcgattgcag
aactgggcacatgaacaagatgagcagctcaaggagaagttgcacagtgaagctcttacc
ctcctgaagagtggaaggttcaaaacagtctttgataaggccttggtcttatgtcagatg
cacaatttcaaggatggtgttctctacctctatgagcagggcaaacttttccaacagatc
atgcactaccacatgcagaacgagcagtacaagaaggtgatcgaggtgtgtgagctgtat
ggcgaccaagaggcttgtctctgggaacaggctcttggctactttgcacggaaggaggag
aactgcaaagagtatattgctgcagtgctgaaacacattgagaacaagaatcttatgcct
ccgctgcttgttgtgcagacgctggctcataactccacagccaccctgtctgtgattaag
gattatcttgtcaacaagctgcagaagcaaagctgccagatagagcaggatgagcagaga
attcagaaataccaagaagaaactacaaggatccgcctggaaattgaagagctaaaagca
agtcccaagatttttcagaagaccaagtgtagcatttgcaccagtgcattggagctccct
tcagtccactttttgtgcggtcattcctttcaccagcactgctttgaaagctactctgag
agtgattcggaatgtcctacttgcatgccagaaaatcgcaaagtgatggatatgatccga
gcccaggagcagaagagagatctgcatgaccagtttcagcatcagctcaagtgttcaaac
gatggcttctcagtcgttgctgactactttggtcgcggtgtcttcaataagctcaccctg
atcacggacttgccctcggggaagacggctaccacgatcgaggctggcctgcagcgggag
ctgctcatccataccaagcgcagtacctga
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