Hirundo rustica (Barn swallow): 120763296
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Entry
120763296 CDS
T09369
Symbol
COMP
Name
(RefSeq) cartilage oligomeric matrix protein
KO
K04659
thrombospondin 2/3/4/5
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04145
Phagosome
hrt04510
Focal adhesion
hrt04512
ECM-receptor interaction
hrt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120763296 (COMP)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120763296 (COMP)
09144 Cellular community - eukaryotes
04510 Focal adhesion
120763296 (COMP)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120763296 (COMP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120763296 (COMP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120763296 (COMP)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120763296 (COMP)
Membrane trafficking [BR:
hrt04131
]
Endocytosis
Phagocytosis
Opsonins
120763296 (COMP)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120763296 (COMP)
Exosomal proteins of colorectal cancer cells
120763296 (COMP)
Exosomal proteins of bladder cancer cells
120763296 (COMP)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120763296 (COMP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
120763296
NCBI-ProteinID:
XP_039942411
LinkDB
All DBs
Position
26:261760..277176
Genome browser
AA seq
728 aa
AA seq
DB search
MIPALLVFFLLSCPLSLCQQRRIDPSRPLHSAATRKDAAFSRNPGNALGTGGEVGPEMLQ
EMRETNRVLLEVRDLLKQQIKEITFLKNTVMECDACGMRPEVTGPVITMTQFGRCVPNPC
FPGVPCTESAGGFRCGPCPAGYSGNGTHCTDINECNANPCFPKVQCINTNPGFRCDPCPP
GFTGQLLEGVGMAFARANKQVCTDINECETGAARNCVPNSICINTRGSYKCGACKPGFVG
DQISGCRSQAAPGTRRCPNGEISPCHEKAECIVERDGSLSCQCLVGWAGNGYVCGKDTDI
DGVPDEKQRCSDKKCRKDNCVTVPNSGQEDADRDGIGDACDDDADGDGIPNAEDNCVYTR
NTDQRNADKDNFGDACDNCRQVKNNDQRDIDGDGKGDECDDDMDGDGIKNPMDNCRRVPN
PDQRDGDGDGVGDACDSCPTLSNPDQKDTDHDLVGDVCDTNQDSDGDGHQDSRDNCPTVP
NSSQVDTDNDGLGDECDEDDDDDGIPDFRPPGPDNCRLVPNPGQEDSDGDGVGNVCEDDF
DRDMVIDRIDVCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWIVLNQGMEIVQTMNSDP
GLAVGYTAFNGVDFEGTFHVNTATDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANPFR
AVAEPGIQLKAVKSKTGPGEYLRNSLWHTGDTTDQVKLLWKDPRNSGWKDKTSYRWFLQH
RPQVGYIR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgattccagccctgcttgtgttcttcctcctctcctgtcccctctccctgtgtcagcag
agaaggatagatcccagccggcccctccacagtgccgccacccgcaaagatgccgccttc
agcaggaatccagggaatgccttgggaacagggggagaagtcgggccggaaatgctgcaa
gaaatgagggaaaccaaccgggtgctgctggaagttcgggatttgttgaagcagcagatc
aaggagatcacattcctgaagaacacggtgatggagtgcgacgcctgcgggatgcggccg
gaggtgacaggtcccgtcatcaccatgacccagttcggccgctgcgtgcccaacccctgc
ttcccgggcgtgccgtgcaccgagagcgccggcggcttccgctgcgggccctgccccgcc
ggctactccgggaacggcacccactgcaccgacatcaacgagtgcaatgccaacccctgc
ttccccaaagtccagtgcatcaacaccaaccccggcttccgctgcgacccctgcccgccc
ggcttcaccgggcagctgctggaaggggtgggaatggcctttgccagggcaaacaaacag
gtgtgcaccgacatcaacgagtgtgagaccggggctgccaggaattgtgtcccgaactcc
atctgcatcaacacccggggatcctacaaatgcggggcctgcaagccgggcttcgtgggg
gatcagatcagcggctgccggagccaggcggcgccggggacgcggcgctgccccaacggc
gagatcagcccgtgccacgagaaagccgagtgcatcgtggagagggacggctccttgtcc
tgccagtgcctcgtggggtgggcagggaacgggtacgtgtgcgggaaggacacggacatc
gacggagtccccgacgagaaacagcgctgctccgacaagaaatgccgcaaggacaactgc
gtgactgtccccaactccggccaggaggacgcggacagggacgggatcggggacgcctgc
gacgatgacgccgacggggacgggatcccgaacgccgaggacaactgcgtgtacacgagg
aacacggaccagcgcaacgccgacaaggacaacttcggggacgcgtgtgacaactgccgg
caggtgaagaacaacgaccagagggacatcgacggcgacggcaagggcgacgagtgtgac
gacgacatggacggggacgggatcaaaaaccccatggacaactgcaggagagtgcccaac
cctgaccagagggacggggacggggacggcgttggggacgcctgtgacagctgccccacc
ctcagcaaccccgaccagaaagacaccgaccacgatctggtgggagatgtctgtgacacc
aaccaggacagcgatggcgacgggcaccaggattcccgggataactgccccacagtgccc
aacagctcccaggtggacacggacaacgacgggctgggggacgagtgtgacgaggacgac
gacgacgacggcatccccgacttcagaccccccggccccgacaactgcaggctggtgccc
aaccccggccaggaggactctgatggggacggcgtggggaacgtgtgcgaggacgacttc
gacagggacatggtgatcgacaggatcgacgtctgccccgagaacgctgaggtgacgctc
accgacttcagggccttccagaccgtggtgctggaccctgagggggatgcccagatcgac
cccaactggatcgtcctcaaccagggcatggagatcgtccagaccatgaacagtgatcct
ggcctggctgtagggtacacggcctttaacggggtggacttcgagggcaccttccacgtc
aacacggccacggacgacgactacgccggcttcatcttcggctaccaggacagctccagc
ttctacgtggtgatgtggaagcagatggagcagacgtactggcaggcaaaccccttccgg
gccgtggcggagcctggcatccagctgaaggcagtgaaatccaaaacgggccccggggag
tacctgaggaattccctctggcacacgggagacaccacggaccaggtgaagctgctctgg
aaagatccccggaattccggctggaaggacaagacctcgtaccgctggttcctgcagcac
cggccccaggtcggctacatcaggtaa
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