Hirundo rustica (Barn swallow): 120763680
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Entry
120763680 CDS
T09369
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120763680 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120763680 (DDX42)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120763680 (DDX42)
Spliceosome [BR:
hrt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120763680 (DDX42)
Complex B
120763680 (DDX42)
Complex C
U2 SnRNP specific factors
120763680 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120763680
NCBI-ProteinID:
XP_039943076
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All DBs
Position
27:4506192..4522439
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AA seq
1160 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGMVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANAESPIAATAAAKGVPGFTGTGSLSSVPA
FPGGAAQGFSGANAGANSRESGGGVARERYSDNRNSRHGEAPRRGEGGGRGEGGGRYNND
AQQRYSDAQRDAQQRYSDSQQRYNDSQQRYNDSQQRYSDAQRDAQRYSDSQQRYGDAQRD
AQQRYSDSQRDAQQRYSDSQRDAQQRYDSQRDAQQRYGDAQRDAQQRYDSQRDAQQRYDS
QRDAQQRYSDSQRDAQQRYDAQRDAPRYSDAQPQRYGDAQRDAQRYNDSQRYNDAQPQRY
DSQRYNDAQPQRYNDAQPQRYNDGQRYSDAQPQRYNDGQRYNDAQPQRYSDGQRYSDGQR
HGEGGGRHGDPSRHGDVHRHGEGRHFSDLPGGGNRNNGDSRNSSESRNGESRKEANSRDN
KTDGFAVPEPPKRKKSRWDS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggtcctggtacaaagagaggctttgggtttggtggatttgcc
ataacccctggcaagaaagaggagcccaagctgtctcagcagtcccacagtgcctttggc
accgctggctcctcggcagcgtttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaaacgagccaattttgatgaggagaatgcgtacttcgaggatgaagag
gaagattccagcaatgtggaattgccctacattcccgcggagaattcccccactcggcag
cagttccattccaaatcggccgactctgacagcgacgatgatcctctggaggctttcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggctgagaaccccactgctggcatggtgcaggaggaggaagaggataac
ctggagtacgacagcgatgggaatccgattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagatcgaatacccaccgtttgagaagaatttctatgatgag
cacgaggagatcaccagcctgacgccgcagcaagtggtggagttacggcataagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttggattt
gatgagcaacttatgcatcagattaggaaatctgaatatacccaacccactccaatacaa
tgtcagggtgttccagtggcactgagtggcagagacatgatcgggatagccaagactgga
agtgggaaaacagctgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgaacctggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctataacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcacgccaggtcgtttgattgaccatgtgaaaaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacaggatgtttgatatggggtttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgatcgaccccattcgggttgtg
caaggagacattggagaggcaaacgaagatgtcactcagatcgtggagatcttcccctct
gggcccagcaagtggaactggctgacgcggcgcctcgtggagttcacgtcctccggcagc
gtcctcctcttcgtcaccaagaaagccaacgcagaggaactggccaacaacctcaagcag
gaggatcataacctggggctgctccacggggacatggaccagagcgagaggaataaagtc
atttcggagtttaagaagaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagaccgtcatcaactacgacgtggctcgggacattgac
acccacacgcaccgcatcggccgcaccggccgcgccggggagaagggagtggcctacacc
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccagcacgtctccaaagagctgctggatttggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaatattggtggtggtggcttgggatac
cgtgaacgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacgggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagccacttcgttgccgcaagtttaaataaccaa
aagactgggagctctgccgctggcgccagcggctggaccagcgccgggagcctcaactcc
gtcccgacgagttcggcgcagcagaacgcggccaacgccgagagccccatcgcagccacc
gccgcggcaaagggcgtcccgggcttcacgggcacgggcagcctgagcagcgtccccgcc
ttccccggcggcgcagcgcagggcttcagcggcgcaaatgccggcgccaacagtcgagaa
agcggcggcggcgttgccagagaacgctacagcgacaaccggaacagtcggcacggcgag
gccccgcggcgcggggagggcggcggccgaggggagggcggcggccgctacaacaacgat
gcccagcagcgttacagcgatgcccagcgtgatgcccagcagcgttacagcgattcccag
cagcgttacaacgattcccagcagcgttacaacgattcccagcagcgttacagcgatgcc
cagcgtgatgcccagcgttacagcgattcccagcagcgttacggtgatgcccagcgtgat
gcccagcagcgttacagtgattcccagcgcgatgcccagcagcgttacagtgattcccag
cgcgatgcccagcagcgttacgattcccagcgtgatgcccagcagcgttacggtgatgcc
cagcgcgatgcccagcagcgttacgattcccagcgcgatgcccagcagcgttacgattcc
cagcgcgatgcccagcagcgttacagtgattcccagcgcgatgcccagcagcgttacgat
gcccagcgcgatgccccgcgttacagtgatgcccaaccccagcgttacggtgatgcccag
cgtgatgcccaacgttacaacgattcccagcgttacaatgatgctcagccccaacgttac
gattcccaacgctacaacgacgcccagccccagcgctacaacgacgcccagccccagcgc
tacaacgacggccagcgctacagcgatgctcagccccagcgctacaacgacggccaacgt
tacaacgacgcccagccccagcgttacagcgacggccaacgctacagcgacggccaacgc
cacggcgaaggcggcggccggcacggcgacccctcccggcacggcgacgtccatcgccac
ggcgagggccggcacttctccgatttgccgggcggcggcaaccgcaacaacggtgacagc
aggaacagcagcgagagcaggaacggagagagcaggaaggaggccaacagccgggacaac
aagacagatggttttgctgtcccagagcccccaaaaaggaagaagagccggtgggacagt
taa
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integrated database retrieval system
