Hirundo rustica (Barn swallow): 120763795
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Entry
120763795 CDS
T09369
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120763795 (CASC3)
03015 mRNA surveillance pathway
120763795 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120763795 (CASC3)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120763795 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
120763795
NCBI-ProteinID:
XP_039943292
LinkDB
All DBs
Position
27:complement(3429088..3440892)
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AA seq
722 aa
AA seq
DB search
MADRRRQRASQDSEDSEGSAASDSAGSAPGSARSRSRSGSGSRSRSRSGSPRLPHRPPRG
AAGALGAGPRGRGTESAGWAGGKSAAESECESEDGIEGDAVLSDYESAEDSEAEEEDYSE
EESSKMELKQDSNDSCESVARGEKGNEKADPKGAVTGERQSGDGQESTEPVEKKVGKKVP
KHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDE
QAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGA
KSPSAPPRSFNSRSSASAGRMPPARNYPRMGGYKETRPGYRALEAAVPHRNGEQAKQESG
YRGKRAEQSPSRDTSPELEVTHVHGSPGKEEGALENQATAADAAQPPPDRPVEKKSYSRA
RRTRVKAGEAGKLAEEAPASEGLAPVIPKPTPAETSPPPAKSNWESPAQSSVDGLEQEMT
QMNLTEQNWSPGQSQFIPPRELRGIPNHVHVGTGPPPQFNRMEEMAVQGGRVKRYSSQRQ
RPPVPEPAPPMHISIVEGHYYDPLQFQGPIYTHGENPAPLPPQGMIVQPEMHLPHPGLHP
HQTPPAMANPGLYPPPVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPPP
PHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKAEKSKERS
NT
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacagcgagggctcggcg
gcctccgacagcgctggctccgctcccggctccgcccgctcccgctcccgctcgggctcc
ggatcccgctcccgctcccggtccggctcgccccgcctgccgcaccgcccgcctcgcggc
gccgcgggggccctcggcgctgggccgcggggccgcggcaccgagagcgccggttgggcg
ggggggaagagcgcggccgagtcggagtgtgaaagtgaggatggcatcgaaggcgatgcc
gtgctctctgactatgaaagcgccgaggactcggaggcagaggaagaggattacagcgag
gaagaaagctccaagatggagctgaagcaggacagcaacgattcctgcgagtcggtggcc
agaggggagaaggggaatgagaaggcggatcccaagggagcggtgacgggcgagcggcag
agcggggacgggcaggagagcacggagcctgtggagaagaaggtggggaagaaggttccc
aagcacctggacgacgatgaggatcggaagaacccggcgtacatcccgcgcaaggggctc
ttctttgagcatgacctccgagggcagacgcaggaggaggaggtcaggccaaagggtcgt
cagcggaagctgtggaaggacgaggggcgctgggagcacgacaagttccgtgaggatgag
caggcccccaagaccaggcaggagctgatcgcgctgtacggatacgacatccggtcagcc
cacaaccccgacgacatcaaaccccgcaggatgcgcaaaccacggtttggcagtccccct
cagcgagaccccaactggtccaacgagaggccccccaaacccccgaggcaccagggtgcc
aagagcccctcggctcccccacggtccttcaacagccgcagctctgccagtgctggcagg
atgcctcctgccaggaactaccccaggatggggggctacaaggagacccggccgggctac
cgggctttggaggccgctgtcccgcaccgcaacggggaacaagccaagcaggagagcggc
taccgcgggaagcgtgcggagcagagcccgtcaagggacacgtcccctgagctggaggtg
acacatgtccacggcagccctgggaaggaggagggggctctggaaaaccaagccacggcc
gccgacgccgcgcagccgccgccggacagaccggtcgagaagaaatcttattcccgagcg
agaaggaccagagtcaaggccggggaggcggggaaactggcagaggaagctcctgcttct
gaggggctggctcccgtgattccaaaacccacaccagccgagacctcccccccgccagcc
aaaagcaactgggagtcgccggcgcaatccagcgtggatggacttgagcaggagatgacc
cagatgaacctgacagagcagaactggagcccggggcagtcccagttcatcccgccccgg
gagctgaggggtattcccaaccatgtgcacgtgggaaccgggccaccgccgcagtttaac
cggatggaggagatggcggtgcaggggggccgcgtgaagcgctactcatcgcagcggcag
agacccccggtgccggagcccgcgccccccatgcacatcagcatcgtggaagggcactac
tacgacccactacaattccagggaccaatctacacccacggtgagaacccagccccgctg
ccgccccaagggatgattgtgcagccggagatgcacctccctcatccaggtttacacccc
caccagacgccccctgccatggcaaaccccggcctctaccccccaccagtgtccatgccc
ccgggccagcccccgccgcagcagctgctcactccgacttacttctccgcccctggagtg
atgaatttcgggaatcctggctacccctacccccctggagctctgccccctccgcctcct
cctcatctctattccaacacgcaggcgcagtcccaggtctatgggggggtcacctactac
aacactgtccagcagcaggtgcagcccaagccctccccgccccgccggacgtcccagcct
gtgaccatcaagccaccgcctccagaggacagcaaagctgaaaaatcaaaggagaggagc
aacacgtag
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integrated database retrieval system
