Hirundo rustica (Barn swallow): 120763960
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Entry
120763960 CDS
T09369
Symbol
USP39
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120763960 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120763960 (USP39)
Spliceosome [BR:
hrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
120763960 (USP39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
120763960
NCBI-ProteinID:
XP_039943529
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All DBs
Position
28:complement(1187520..1192857)
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AA seq
583 aa
AA seq
DB search
MSSRGRRDRDPREPRGASAASSARGSSRSRRDADAERSRGRREAERERARREAAEALPXW
ISRASRGNRAPAPASWGGSGTAASAAPVRVKREREPDGDSDPEPEPAVRYGRFDPEDQRS
RHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQLSHH
VFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDGTTYLP
GIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRRIQRPPGDIMFLLVQRFGELMR
KLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHAALGGTKRKKK
TIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLTLDLPTAPLYK
DEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRFTKNNF
FVEKNPTIVNFPITNVDLREYLSEEVQAAHSHTTYDLIANIVHDGKPSEGSYRIHVLHHG
TGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgcgggaggcgggaccgcgacccccgggagccccgcggggcttccgccgcc
tcctccgcccggggctcctcccgcagccgccgcgacgccgatgccgagcggtctcggggc
cggcgggaagcggagcgggagcgcgcgcggcgggaggcggcggaggcgctgccgnngtgg
atctcgcgcgcgtcaagagggaaccgggcaccggcaccggcgtcttgggggggctccggc
accgccgcctccgccgcacccgtccgtgtgaagcgggagcgggagccggatggagactcc
gaccctgagcccgagcccgccgtgcgctatgggcgcttcgaccccgaggaccagcgcagc
cggcactgcccctacctggacaccatcaacaagagcgtcctggacttcgactttgagaag
ctctgctccatttccctgtcccacatcaatgtctatgcctgtcttgtctgtgggaagtac
ttccagggccgcgggctgaagtcccacgcctacatccacagcgtgcagctgagccaccac
gtgttcctcaacctgcacacgctcaagttctactgcctgcccgacaactacgagattatt
gactcgtctctcgaggacatcacgtacgtgctcaagcccaccttcacggcccagcacatt
gcccacctggacaaacaggccaagctgtcccgggcctatgatggcaccacgtacctgcct
ggcatcgtggggctcaacaacatcaaggccaacgactacgccaacgctgtgctccaggcc
ttgtctaatgtgccgcccctgcggaattacttcctggaggaggagaactaccggcgcatc
cagcgcccgcctggggacatcatgttcctgctggtgcagcgctttggggagctcatgagg
aagctctggaacccccggaattttaaggcacatgtgtcaccccatgagatgctccaggct
gtggtgctctgcagcaagaagaacttccagatcaccaagcagggggatggggtggagttc
ctgtcctggttcctgaacgcgctgcacgcagcactgggtggcaccaaaaggaagaagaag
accatcgtcaccgacgtgttccagggctccatgcgcatcttcaccaagaagctgccacac
cctgacctgccagcggaggagaaggctcagctgctgcagaacagtgagtaccaggagcgc
atggtggagtccacgttcctgtacctgaccttggacctgcccacggcgccgctctacaag
gacgagaaggagcagctcatcatcccccaagtgcccctgttcagcatcctggccaagttc
aatggcagcaccgagaaggagtacaagacctacaaggagaacttcctgaagcgtttccag
ctgacacgcctgcccccctacctcatcttctgcatcaagcgcttcaccaagaacaacttc
ttcgtggagaagaaccccaccatcgtcaacttccccatcacgaatgtggatctgcgggaa
tacctgtcggaggaggtgcaggccgcgcactcccacaccacctacgacctcatcgccaac
atcgtgcacgatgggaagccctcggagggctcctaccgcatccacgtgctgcaccatggc
acagggaagtggtacgagctgcaggacctgcaggtgaccgacatcctgccccagatgatc
accctgtctgaggcctacatccagatctggaagcgacgcgaggaggatgagacaaaccaa
caaggcgcctga
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