Hirundo rustica (Barn swallow): 120764348
Help
Entry
120764348 CDS
T09369
Name
(RefSeq) sodium channel protein type 5 subunit alpha-like
KO
K04842
voltage-gated sodium channel type X alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hrt04040
]
120764348
Ion channels [BR:
hrt04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120764348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
120764348
NCBI-ProteinID:
XP_039944236
LinkDB
All DBs
Position
1:complement(151214527..151246697)
Genome browser
AA seq
1990 aa
AA seq
DB search
MAEFLLPGTNNFRRFTQESLAEIKKRIAAEKNRQRNAIEQKPEEKPRPQLDLKAFQKLPA
LYGSPPPELIGEPLEDLDPYYKDHKVFIVLNKQKTIYRFTATRALWIFSPFHPIRRRAIK
ILVHSLFTWFIMCTIITNCVFMALTESSKSSSPSWNTYVEFTFTGIYTFESLIKILATGF
CLNEFTFLRDPWNWLDFTVIIMAYVGAFSDLGSVSVLRTFRVLRALKTISVVPGLKIIVG
ALIQSVKKLANVMILTVFCLSVFALIGLQIFKGNLRQKCIRNTTEFCNKTWESYEKFVND
SDDFARKKGTVDILLCGPGAGVCPPGYKCCKIGPNPDYGFTSFDTFGWAFLSLFRLMTQD
YWERLYQQTLRASGKVYVLFFMMVIFLGSFYLVNLILAVVTMAYEDQNKATIAETEAKER
KFREAMELLQKEQESLGIKDIDIPSLSSFEASSLSPKDIKERSNRKKRNKSLGREDNEEG
EEFPKSQLPDSQRKLSLLGLAYGPRASQAARRLSHGSVFNFQIPAAEAGSRAGCGGEDTH
KPRCWSLSGAQMGRRPSLQSQRGHSSHPGTPNWARSSKGDSADEHLGVGSGMGGGSSRVH
SQDPVSSEGATLPPVMEGPGKGDRPAVHDESSTMHLPPHLSVEYFNEALQRQRAASVVSI
ITSVLEEHEEAQQKCPPRLKNFALKYLIWDCSPLWLRIKEKVSAFIKDPFFDLTITVCIV
MNTLFMALEHNNMSPTFKFMLKIGNLVFTGIFTAEMILKIIALDPYYYFQQPWNIFDSVI
VTLSLIELSFPKQNKKERRKGGALSVLRSFRLLRVFKLAKSWPTLNTLIKIICNSLGALS
NLTLVLAIIIFIFAIVGVQLFGRSYGSHSDKIKKGCELRWHMKDFFHSFLIIFRILCGEW
IETMWDCMVVAEPSLCLVVFLLVMVIGNLVVLNLFIALLLSSFSADSLQTTEDDGEMNNL
RIAFARIHKGVHLVKSVTWDACCRKLRQIKKVHKKKIKLTAQNSLGFKSEETKSCKENYN
NEWIEKNRDKCPGLEDFIRNPNVFVCVPIAEAENTSEGFEDDDKLSTFTDTECSKQDENQ
LRQRGDRAKNSGSWSKGSGFSSEELSVLCLGKDRKEVLTTPEEKELDSFSSSAVSTVDLA
NPEDVLKQIPEFSEDFKTPEQCFPEGCARYFHCCLGSAVKFGGETWWNLRKTCYQIVEHS
WFESFIVFMILLSSGALAFEDIHIHKRERIQAILGFLDKMFTFIFVLEMLLKWVAYGFKK
YFTNAWCWLDFLIVDVSLINLFGSNFGPMKSLRTLRALRPLRALSRFEGMRVVVNALLGA
IPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGKCINMTDENAMISNIDNKTDCEMYNSTGK
IFWVNVKVNFDNVGSGYLALLQVATFKGWMDIMYAAVDSREKDDQPVMESNLYMYLYFVV
FIIFGSFFTLNLFVGVIIDNFNQQKKKISGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPR
PLNRYQGFLFDILTSQMFDVAIMGLICLNMITMMVETYEQSEKKTNILNKINILFVTIFT
AECVLKLLALRQYYFSNAWNIFDLVVVIMSIVALLLSSIGKAFEHFLPPTLFRVIRLARI
GRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMANFAYVKMEDGIDD
MFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPFCDPNINGTIGECGKPAIGIIYFV
SYIIISFLIVVNMYIAVILENFNAATEESTEPLGEDDFDIFYEIWEKFDPEATQFITFSA
VSDFADALPKPLRVPKPNKVELTAMDLPVVSGDKIHCLDILFAFTKRVLGDSGDLDALKV
QMEEKFMAANPSKQSYEPISTTLSHRQKEASATVIQRAYRSHLLQRSLRQASYLYQHRTC
SSDTLGGAAPENEGLIASMLHANYGRSPNRSETSSSVSIPPSYDSVTRESSGNLVVENGE
MSNQQSPDIK
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcttgctgcctggtaccaacaacttccgtaggttcactcaggaatccttg
gcagagatcaaaaagagaattgctgccgaaaagaatcgtcaaagaaatgccatagagcag
aaacctgaggagaaaccacgtcctcagcttgacctaaaagctttccagaagctgccagct
ctctatggaagtcctcctccagagctcatcggggaaccactggaggatctcgacccgtat
tacaaagatcataaggttttcatagtgctaaacaagcagaaaacaatctacagatttact
gctacacgtgccctgtggatcttcagtcccttccatccaatacgaaggagagcaattaaa
attttagtacattcattgttcacctggtttatcatgtgcaccattataactaattgtgtg
tttatggctctgactgagtcatctaagtcttcgtcgccttcatggaacacatatgttgaa
tttactttcactggcatttacacatttgaatcattgataaaaatactggcaacaggattc
tgtctgaacgaattcactttccttcgggatccctggaactggctggatttcactgttatc
atcatggcgtacgtgggagcatttagtgatttgggaagtgtgtcagtcctccggactttc
agggttctcagagctttaaaaaccatttcagtagtcccagggctcaagatcattgtaggg
gcacttatccagtctgttaagaaacttgctaacgtgatgatcctgactgttttctgcctg
agcgtttttgccctcataggtctccagatttttaagggcaacctcaggcaaaagtgcatc
aggaacactacagagttttgtaataaaacatgggaaagttatgaaaagtttgttaatgat
tcagatgactttgctaggaaaaagggtactgtggatattttgctgtgtggtcctggtgct
ggggtctgtcctcctggctataaatgctgtaaaattgggccaaatcctgattatggtttc
accagttttgacacatttggctgggcttttctttccttattccgcctgatgacccaggac
tactgggagcgtctgtaccaacagaccctcagagcttctgggaaggtgtatgtactcttc
ttcatgatggtcatctttctgggctcattttatctagtcaacttgattctggctgtagta
acaatggcatacgaggaccaaaacaaggccaccattgctgaaaccgaggcaaaggaaaga
aagtttcgggaagctatggaattactgcagaaggagcaagagtctctgggtattaaagat
attgatatcccatcacttagctcctttgaagcttcttctctgtcacccaaagatatcaaa
gaaaggagcaacaggaaaaagagaaataagtcactggggagagaagataatgaagaagga
gaagaattccccaagtcacagctcccagacagtcaacgaaagttgtctctcctgggcctg
gcgtacggccccagagccagccaggctgcgcgccggctgagccacgggagcgtgttcaac
ttccaaatccccgccgccgaggctggctccagagcgggttgcggtggcgaggacacccac
aaaccccggtgctggtccctgtcaggagcacagatgggaagacgccccagcctgcaaagc
cagcggggccacagctcccaccccggcaccccgaactgggcgcggagcagcaagggggac
agcgcggacgagcacctcggggtgggctcggggatgggaggagggagcagcagggtgcac
agccaggacccggtgtcctctgaaggagccacgcttccaccagtcatggaaggcccggga
aagggggatcggccagctgtgcatgatgagagcagcacgatgcatttacctcctcatctg
tcagtggagtactttaatgaggctcttcagagacaaagggcagcaagcgtagtcagcata
attaccagtgtcttggaggaacatgaagaagctcagcagaaatgcccaccacgcctgaag
aactttgctttaaagtatctaatttgggactgttcaccactttggttgaggatcaaagaa
aaagtgtctgctttcataaaggatcctttttttgatctcaccatcacggtttgcattgta
atgaacaccttgttcatggcactggagcacaataatatgtcacctacttttaaattcatg
cttaaaataggcaacttggtttttacaggaatcttcaccgcagaaatgatcttaaaaatc
atcgctctagatccctattactattttcagcagccctggaatatttttgacagcgtcatt
gtcacactgagtttaattgaactgagcttccccaaacaaaacaagaaagaaaggcgaaaa
ggaggagccctgtcagtcttacggtccttcaggctgctgagggtcttcaaactggcaaag
tcctggccaactttaaacactctaattaaaattatttgtaactccctgggagcactgagt
aatctgaccctcgtcctggcaatcatcattttcatttttgctatagtaggggtgcaactt
tttgggagaagttatgggtcccacagcgataaaataaaaaaaggctgcgagctacgttgg
cacatgaaggactttttccattcattcctcatcattttccgaattctgtgtggagaatgg
attgagaccatgtgggactgcatggtggttgccgaaccatcactgtgtcttgttgtcttt
ctgctggtcatggtgataggaaatttagtggttctcaaccttttcattgctctgctgctg
agttctttcagtgctgacagtctccagacaacagaggatgatggagagatgaacaatctt
cggattgccttcgctcggatccacaagggagtccaccttgtcaagagcgtgacgtgggat
gcctgttgtaggaagctcaggcagataaagaaagtgcacaagaagaaaatcaaattgact
gcacagaactcacttgggttcaagagcgaagagacaaaaagttgtaaagagaattacaat
aatgaatggattgagaaaaacagggacaaatgcccaggtcttgaagattttattagaaac
cccaacgtatttgtttgtgtccctattgctgaggcagagaatacaagtgagggtttcgaa
gatgatgataaactgagcacatttactgacacagaatgcagcaaacaggatgaaaatcag
ctgaggcaaagaggagacagagcaaaaaattcaggcagctggagtaaaggatcaggattt
tcctctgaagaattaagtgtgctctgtctaggaaaggacaggaaggaagtactgacaaca
ccagaagaaaaagagttggacagtttcagttcttctgcagtcagcacagtggatctggca
aatcccgaagatgttttaaaacagattccagaattttctgaagacttcaagactccagaa
caatgttttccagaaggttgtgctcggtactttcattgttgcctgggtagtgctgtcaag
tttggaggagaaacctggtggaatctgaggaaaacctgctaccagattgttgaacattct
tggtttgaatcctttatcgtgttcatgattcttctgagcagtggagccctggcatttgaa
gacatccatatacataagagagaaaggattcaagccatattgggatttcttgataaaatg
ttcactttcatctttgttctggagatgctcctgaagtgggtggcttatggcttcaagaag
tatttcaccaatgcctggtgctggctggactttctcattgtagatgtctctttgattaac
ctctttggaagtaactttgggcccatgaaatctctcaggactctgcgagctctgagaccc
ttgagagcgctgtctcggtttgagggaatgagggttgtggtcaatgccctgctgggagcc
atcccttccatcatgaatgttctgctcgtctgtctcatcttctggctcatctttagcatc
atgggagtgaacctctttgctgggaagtttgggaaatgtatcaatatgacagatgaaaat
gccatgataagcaatatcgataacaaaacagactgtgagatgtataacagtaccggaaaa
atattctgggtcaacgttaaagtcaattttgataatgttggctctggctacctggctctt
cttcaggtggcaacattcaagggttggatggacatcatgtatgcagcagtagattcacga
gagaaagatgatcagccagtgatggagagcaatctgtatatgtatctgtactttgtggtc
ttcataatctttggatcttttttcaccctgaacctctttgttggtgtaatcattgacaac
ttcaaccagcaaaagaaaaagataagtgggcaagatatttttatgacagaagaacagaaa
aaatactacaatgcaatgaaaaagttgggatccaagaaacctcaaaaacccattccaaga
cctttgaacagataccaaggttttctttttgacattttaacatcccagatgtttgatgtt
gccatcatgggtctcatctgcctcaacatgatcacgatgatggtggaaacctatgagcaa
agtgaaaagaagacaaacatcctcaacaaaatcaatatactctttgttaccatttttact
gcagaatgtgtgctgaaattgctggctctgaggcagtactatttctcaaatgcctggaac
atatttgatttagttgttgttattatgtcaattgttgccttactgctttccagcattggc
aaagcctttgaacatttcttaccacccacactcttcagggtcattcgcttggcccggatc
gggcgaatactgagactcatccggggagccaaaggaattcgaactctgctctttgcctta
atgatgtccctacctgctctgttcaacattggcctcttgctttttctggtcatgttcatt
tatgccatttttggcatggctaactttgcctatgtgaagatggaagatggcattgacgac
atgttcaacttccaaacctttgctaacagcatgctgtgtctcttccaaatcaccacgtca
gctggctgggatggtcttctcagtcctattttaaacactgggccaccattctgtgatcca
aacataaatggtactataggtgaatgtggtaaacctgccataggtattatttattttgta
agttacatcattatatcatttctcattgttgtaaacatgtatatagctgtaattctggag
aacttcaatgctgctactgaggaaagtacggagcctttaggggaagatgactttgatatc
ttttatgaaatctgggagaagtttgatcctgaggcaactcagtttataactttctctgca
gtttcagacttcgcagatgctctgcctaagcctttgcgtgtaccaaaaccaaacaaagtt
gaactcacagcaatggacctgccggtggtgagtggggacaagatacactgcctggatatc
ttgtttgctttcaccaagagggtgttgggagactctggggatctggatgctctgaaagta
caaatggaggagaaattcatggctgccaatccgtcaaaacaatcctacgagccaatatcg
actacgctcagccacaggcaaaaggaagcgtcggccacggtgatccagcgggcctacagg
agtcacctgctccagcgctccctcagacaggcttcctacctgtaccagcacagaacttgc
agctctgacactctgggaggtgctgctccagaaaatgaaggactcattgcatctatgctg
catgcaaattatggtaggagtcctaacaggtctgaaacttcgtcctcagtgtccatccct
ccgtcatatgacagtgtcacaagagagagtagtggtaatctcgtggttgagaatggagaa
atgagcaatcaacagtctccagatattaagtag
DBGET
integrated database retrieval system
