Hirundo rustica (Barn swallow): 120764383 Help Entry 120764383         CDS       T09369                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism hrt  Hirundo rustica (Barn swallow) Pathway hrt04510   Focal adhesion hrt04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:hrt00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120764383 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120764383 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:hrt00536]     120764383 (COL2A1) Glycosaminoglycan binding proteins [BR:hrt00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120764383 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  120764383 NCBI-ProteinID:  XP_039944270 LinkDB All DBs Position 30:complement(836172..861519) Genome browser AA seq 1503 aa AA seqDB search MPGHGPAPGTGTGTGTGPGAAPRPRLLLLLLLLCLAAAAAAQDRDLPEAGSCLQDGHRYS DKDVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPSEQPSGKPGPKG QKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGPPGPRGRDGEPGTPGNPGPP GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQ GNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPRPQGARGFPGTPGLP GVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGAR GNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPA GAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK GEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLA GPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGED GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFP GERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPK GDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGER GEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK GARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDP GLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP GKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPV GAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEA GERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPI GPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEA APGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWIDPNQ GCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETINGGFHFSYGAE DLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDQESGSLRKALLIQGSNDVEIRAE GNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLGPV CFL NT seq 4512 nt NT seq  +upstreamnt  +downstreamnt atgcccggacacggcccggcccccggcaccggcaccggcaccggcaccggccccggagcc gccccccggccgcggctgctgctcctcctcctcctcctctgcctcgccgccgccgccgcc gcgcaggaccgagacctccccgaggctggcagctgcctgcaggacgggcaccgctacagc gacaaggacgtgtggaagccggagccgtgccggatctgcgtgtgcgacacgggcacggtg ctgtgcgacgaaatcatctgcgaggagctgcgggactgccccagccccgagatccccttc ggagaatgctgccccatttgccccagcgagcagcccagcgggaagcccggccccaaggga caaaaaggcgaacccggtgacatcaaagatgtcgtaggaccccgaggacccccgggcccg cagggccccgcaggtgagcagggacagcgaggggaccgcggcgagaagggcgagaagggc ccccccggcccccggggcagggatggggaaccaggaactccaggaaatcccggacccccc ggaccccccggacccccgggacccccgggattgggggggaacttcgcggctcagatggcc gggggcttcgacgagaaggctggaggggctcagatgggcgtcatgcagggacccatgggc cccatgggaccccgcggcccccccggcccctccggctctcccggtccccaaggattccaa ggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccggggacct ccgggacctcccggcaaacctggcgacgacggcgaaaccggcaaacccgggaaatccggc gagcgcggccccccccggccgcagggcgctcgtggcttccccggcacccccggcctgccc ggagtcaaaggtcaccggggttaccccggcctggacggcgctaagggagaggctggagca cctggagccaagggcgagtccggctccccgggcgagaacggctccccagggcccatgggt ccccgcgggctgcccggagagcgaggacgcccgggcccctcgggcgctgcgggtgctcgc ggcaatgacggcctccccggcccggcgggacccccgggtcccgtcggccccgcaggagcc cccggattccccggcgcccccggctccaagggtgaagcgggacccaccggagcgcgagga cccgagggcgcccagggtccccgcggagaatccgggacccccggctcgcccggccccgcc ggagcccccgggaacccagggacggacgggatccccggagcgaagggatcggcgggcgct ccaggcatcgccggcgctccgggattccccggcccccgcggcccccccggaccccaggga gccaccggcccgctgggacccaagggacagacgggcgaacccggcatcgcgggattcaag ggcgagcagggacccaagggagagacgggccccgcaggaccccagggcgcccccggcccg gccggggaggaggggaagagaggagcccgcggagaacccggagctgccggacctttgggg ccgcccggagagaggggcgctcccgggaaccgcggcttccccgggcaggacgggctggcg gggcccaagggggccccgggcgagcgcggccccgccggcctggccggccccaaaggagcc accggcgaccccggacgccccggagagcccgggctgcccggagccagggggctcacgggc cgccctggcgacgctggaccccaaggaaaagtcggccccacaggtgcccccggcgaggac ggacgccccggaccccccggcccgcagggggctcggggccagccgggcgttatggggttc cccggtcccaaaggggccaacggtgagcctggaaaagccggggaaaaagggcttcccgga gcgccggggctgaggggacttcctggcaaggacggagagaccggagccgccggcccgccg ggacctgccggcccggccggggagaggggagagcagggagcccccggcccatcgggcttc caggggctgccagggccaccaggtccccccggtgagagcggcaaacccggagatcagggc gttcctggagaagccggagcccccgggctcgtgggtcccaggggcgagcgcggtttcccg ggcgagcgcggctctccgggcgcccagggcctgcagggaccccgcggcctccccggcacc cccggcacggacggacccaagggtgccaccggccccgccggccccaacggagcccaggga cccccagggctgcaggggatgcccggggagagaggagccgccggcatcgccggtcccaag ggggacaggggagacgtcggagagaagggacccgagggagcgcccgggaaggacggagct cgcggtctgaccggtcccatcggcccccccggccccgctggccccaacggcgagaagggc gagtccggccccccgggcccctccggagccgccggtgcccgcggtgcccccggagagcgc ggagagcccggagcccccggccccgccggattcgccggacccccgggcgccgacggccag cccggagccaagggcgagcagggggagcccggccagaagggcgacgccggagcccctggg ccccagggtccctccggagctcctggaccgcagggtcccaccggtgtcaccggtcccaaa ggagctcggggcgctcagggacccccgggagccacaggattccccggagccgccggacgc gtgggaccccccggccccaacggtaaccccggcccccctggcccccccggctcggcgggc aaggacggccccaagggcgcccggggcgacgcgggacccccgggccgagcgggggacccg gggctgcagggccccgccggcccccccggcgagaagggcgagcccggcgaggacggcccc gcgggtccggacggtccccccggcccccaggggctggcagggcagcgcggcatcgtgggg ctgccggggcagcgcggcgagagaggattcccggggctgcccggaccctcgggagagcct ggaaaacagggagcacctggatctgccggtgaccggggaccccccgggcccgtgggaccc cccgggctgaccgggccggccggagagcccggcagggagggaaatcccggctctgacgga cccccgggcagggatggagctgctggagtgaagggcgatcgtggtgagaccggccccgtg ggcgctcccggagctcccggcgctcccggcgctcccggccccgtgggacccactggaaaa cagggagacagaggagagacgggtgctcagggtcccatgggtccctccggccccgctggc gctcgggggatgccgggtccccaggggccgcgcggtgacaaaggcgaggcgggcgaggcc ggcgagcgcggcctgaaggggcaccgcggcttcaccgggctccaggggctgcccgggccc ccgggtccttccggagaccagggcgccgccggacccgcgggtccctccggacccaggggt ccccccggccccgtgggcccctcgggcaaggacggctccaatgggatgcccggacccatc ggaccccctgggccccgcgggaggagcggagagcccggaccggcgggtccccccgggaac cccggccctcccgggccccccgggccccccggcaccggcatcgacatgtcggcgttcgcg gggctggggcagcccgagaagggccccgaccccgggcgctacatgcgggcggacgaggcg gcgccggggctgcggccgcacgacgccgaggtggacgccaccctcaaggccctcaacaac cagatcgagagcatccgcagccccgagggctcccgcaagaacccggccaggacctgccgg gacatcaaactctgccaccccgactggaagagcggcgattactggatcgaccccaaccag ggctgcaccctggacgccatcaaggtcttctgcaacatggccacgggggagacgtgcgtg taccccagccccggcagcatccccaggaagaactggtggagcagcaaagccaaggagaag aagcacgtctggttcgccgagaccatcaacggcggcttccacttcagctacggcgctgag gacctggcgcccaacacggccaacatccagatgaccttcctgaggctgctgtccaccgag ggctcccagaacgtcacctaccactgccgcaacagcgtggcctacctggaccaggagtcg ggcagcctgcgcaaggcgctgctcatccagggctccaacgacgtcgagatccgcgccgag ggcaacagcaggttcacctacagcgtgctggaggacggctgcacgaaacacacggggaag tggggcaggaccgtcatcgagtaccgctcgcagaagacctcgcgcctgcccatcgtggac atcgcacctatggacattgggggacccgagcaggagttcggggtcgacctcggccccgtc tgcttcttgtag

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