Hirundo rustica (Barn swallow): 120764857
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Entry
120764857 CDS
T09369
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04382
Cornified envelope formation
hrt04510
Focal adhesion
hrt04512
ECM-receptor interaction
hrt04518
Integrin signaling
hrt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120764857 (COL4A2)
04518 Integrin signaling
120764857 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120764857 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120764857 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120764857 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120764857 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120764857 (COL4A2)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120764857 (COL4A2)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120764857 (COL4A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120764857
NCBI-ProteinID:
XP_039944910
LinkDB
All DBs
Position
2:complement(94153782..94297324)
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFLCQDTGLLLILMEVVLSAVKVDAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGHPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDLGTPGLSGFPGSIGVQGPKGQKGEPYIVAPEI
ISRYRGDPGDSGFIGFPGPPGTMGIQGPIGPRGQRGRPGPPGPPGPPGPQGNRGLGFYGE
KGEQGPPGPPGPPGLPTGELMGVPPDKHKGERGDPGPRGDAGIPGVLLFPLEKGEEGVMG
YPGERGLPGISGFPGLSGERGFPGFDGPPGGHGPRGSKGEPGEMGAPGPDSYFPSRIPRK
GARGDPGFPGASGLPGDPGEEGDPGLPGLPGFSDGDGDKPGLPGEMGPKGEKGEIGSPAY
FAGPPGLPGKDGAPGLRGPPGPVGAPGPLFGLKGREGTPGRFGIQGFPGPRGQKGPKGEE
GDCTRCLLGEELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPAG
FPGRKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDAVRGF
PGDPGYPGELGPKGFPGEAGLPGEGFPGPKGFRGPPGDQGQAGNPGSPGLPGLPGEPGQL
DCGQVTEDFPRGDATEPIWSGAGCVRPPKGSQGKPGVPGATGAKGARGFPGDPGPMGYPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAAAGSRGDVGLPGLPGLKGAPGDQGVPGARGSDGSPGLPGPKGDPGPQGLPGLMGLPGA
PGTHGFPGPPGSRGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGHTGL
PGIRGVTGPPGISGMDGFPGDKGLRGSPGIDGFKGMTGLKGRPGIKGIKGEFGPLGARGD
KGSQGARGFKGDRGDQGPPGDPPKLMPSMMIEVKGEKGDVGERGTKGLFGLKGSKGMPGF
PGKTGTPGSPGHPSYVAGVKGDIGAKGLTGVKGYPGPTGSPGIRGFPGTTGIRGEKGIPG
ISGHFGTPGSHGEIGDRGDTINLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGSPGTPGFTGEKGTPGWPGLPGQAGQPGLRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGAVGDKGEAGEPSRVEGSRGPPGQKGDRGVPGVP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGIPAPPGSKGESGQV
GRTGEIGPKGSRGDPGSVGGPGMPGFPGPKGRKGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGFRGSPGE
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGFEGQPGRPGSPGPPGMPGRSVSMGYLLVKHS
QSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagtgcacgtattttcctttgtcaggatacggggcttttg
ctgatcctgatggaagttgtgctgtcagccgtcaaagtagacgctggtggaaagaaatac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggactccttggatcacagggattcactggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggacacccaggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccctggggcagatggc
attcctggtcatccaggccagccaggaccaagggggaaaccaggtcatgacggctgtaat
ggtacagcaggtgaccctggtgacttgggaactcctggactctctggtttccctggtagc
attggagtccaagggcccaagggccagaagggagagccgtacatagtagcgccggagatc
atcagccgatacaggggagatccaggggattcagggttcattggttttccaggacctcca
ggtacaatgggtattcaaggacccattggtccaagaggacaacgaggaagaccaggacca
ccaggacccccagggcccccaggaccacaaggcaacaggggccttggtttctatggagaa
aaaggtgaacagggccccccaggtcctccaggtccacctgggcttcctacaggagaactg
atgggtgtcccccctgacaagcacaagggtgaaagaggagaccctggaccaagaggggat
gctggaattccaggtgtacttctctttcctctcgaaaaaggtgaagaaggggtaatgggc
tacccaggagaaaggggactgcctggcatcagtggttttccaggactcagtggagaaaga
ggttttccaggatttgatggtccacctggtggccatggtcccagaggaagcaagggggag
cctggtgagatgggtgctccagggccagattcctattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggcttcccaggtgcttctggactcccaggagacccaggagag
gagggagatcctggattgcctggtcttcctggattttctgatggggacggggataagcca
ggcttacctggagaaatgggaccaaaaggtgaaaagggtgaaataggatctcctgcttat
tttgcgggaccacctgggcttccgggtaaggacggcgcaccaggacttcgcggtccacct
ggtcctgttggagcccctggtcctctctttggattaaaaggacgagagggaacaccgggt
agatttggtatacaaggtttccctgggccaagaggacaaaaaggacctaaaggtgaagaa
ggggattgcactagatgccttttgggtgaggaactcagaaggggctctactggcccccgt
ggccctcctggctttccaggaacccctggccagcctggacggaaaggagaacctggtgat
caaggaccacatggtcttcctggctaccctggagcaaaaggattttcgggtccagctgga
tttcctggacggaaaggagaaaagggagactctttacacataactacgaaaggcaccaaa
ggaatccgaggagatcccgggctgcctggaatcagaggtgaagatggttttccaggcaga
gatgggttagatggtttaccaggacagcctggccttccgggtgatgctgtcagaggcttc
cccggtgatcctggttatccaggtgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtgaaggattccctggtccaaaagggttccggggtcctccgggtgaccaagga
caagctggaaacccaggatctccaggtctgccaggtctgcctggagagcctggccagcta
gactgtggccaggtcactgaagactttcctagaggagatgcaaccgaaccaatatggtca
ggtgcaggctgtgtaaggccaccaaagggatcccaaggaaagccaggagtgccaggagcc
acaggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggttacccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
ggacccaggggagacagaggcccgaatggtctacccggactgcagggacacccaggtctt
acaggaaaatccggagctccgggagcaccaggacccaagggtcttcctggtgacgtgttt
ggagcagcagcaggttcccgaggggacgtcggcctccccggcttgccagggttgaaaggc
gcaccaggagatcaaggagtaccaggagctagaggatcggatggtagcccaggtttgcca
ggacccaaaggagatccagggccacaaggtctccctggtttgatgggattaccaggagca
ccaggaactcacggattcccgggtccaccaggaagccgtgggccagatggtgggcctggc
tctcaaggacctctcggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccccgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtcacacgggatta
ccaggtatacgtggtgtgaccggtccccctggcataagtggaatggatggctttccagga
gataaaggcttgagaggttcacctggcattgatggtttcaaaggcatgacaggcctgaaa
ggaagaccaggcatcaaaggaatcaaaggagaatttggcccacttggggctcggggagat
aaaggctcacagggtgcacgtggcttcaaaggtgaccgtggggatcaaggccccccagga
gaccctccaaagctcatgcccagcatgatgatcgaagttaaaggtgaaaaaggagatgtt
ggagaaaggggcacaaagggactctttggcttaaaaggtagcaagggaatgccaggcttt
cctggaaagacaggaaccccagggtcccctgggcatcccagctacgtggctggtgtgaaa
ggagacatcggcgccaaagggctgacaggtgtgaaaggataccctggtcccactggttct
cctggcatcagaggcttccctggcaccacaggaatcagaggagaaaagggcattccagga
atttcaggccattttggtactcctggctcacatggagaaataggtgatcggggagatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccaggtttaacaggc
ataagaggaggtgtgggaccaaaaggagaaggtggtgatcctggtttccctggtattgaa
ggcctcaagggcacacagggtgtccctggctctgtgggacaggaaggtttgccaggactg
gttggccccccagggcagcaaggaagccctgggactcctggattcacaggcgaaaaggga
actcccggctggcctggcttacctggacaagcaggccagcctggcttgagaggaatcagt
ggactgcatggcttaccaggcactaagggtttaccaggatcaccaggtccagatgggtac
ggctctgcaggtttcccaggggcagtgggtgacaaaggagaagcaggagagccaagccga
gtagaaggcagccgaggacctccgggccagaagggagacagaggtgttccaggagtccca
ggaccctttggtatccctgggcaggagggttttccagggcctcctgggatttcaaacata
tcaggatatcctggtgataaaggctccccaggtctagatggagttccaggctatccagga
ccacagggccagcctggaatacctgctccaccagggagcaaaggagaaagtggacaagta
ggtaggactggagaaattggcccaaaaggaagtagaggtgaccctggatcagtaggagga
cctggcatgcctggattccctggaccaaaaggtcgtaagggtgaacaaggtgtcatcggc
tttatgggcacagtaggatttccaggtgatctgggacctattggacccaagggagacaga
ggagtaactggcttccagggacctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcacctggtccccgtggaaatataggacctcagggaagccca
ggagacatgggacctcaggggccaccaggagatccaggtttcagaggctcacctggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggggaacaaggt
ggaatgggatttcagggtccagtgggatttgaaggtcagccgggccgccccggtagccct
gggccgccgggcatgccggggcgcagcgtcagcatgggctacctgctggtgaagcacagc
cagtccgagcaagagccaatgtgcccggtgggcatgaacaaactctggagtggatacagc
ctgctgtattttgaaggacaagagaaagcacacaaccaggatctagggctggctggctca
tgtttgtctcgttttagcaccatgccattcctctactgtaaccctggggatatttgttac
tatgcaagtcgaaacgataaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagacattaagccatatatcagtcgctgctcggtttgtgaggcccca
gccgtggcaattgctgtccacagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacagtcgctggtttctcctgggagctgcctggaggatttcagggcgactcctttcatc
gaatgcaatggcgcacgcggaacctgtcactactttgcaaacaaatacagcttctggctc
accacgattgaccaacccttccaaagcaagccctcgggagacaccctcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaacctatag
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integrated database retrieval system
