Hirundo rustica (Barn swallow): 120764891
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Entry
120764891 CDS
T09369
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120764891 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120764891 (PCF11)
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120764891 (PCF11)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120764891 (PCF11)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120764891 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
120764891
NCBI-ProteinID:
XP_039944947
LinkDB
All DBs
Position
2:complement(35130241..35151099)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASPPPVVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVHSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKGNKTAQTEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDSKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTATEESEKQGGKPGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQATRDERNSN
KRNVKQEVRDPRRLKKVQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRTPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFPERARRHSPVSGTTRSFAENLSPLESRRRLEDQRATKGTRGSDPYDSWGESDEFR
DALRQQGKSTAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRITALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLSGSGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPMRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGALRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPMGPHGQLGGGLRFEGPHGQPM
GPHGPSGAGLRFEGPHGPSGGGRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAGP
RFDGCHGAGFDGPSGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPAS
RFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRTDLFDG
SPGPNFNGPAGPGAQSFPLRAAGHYFEEKGLQGPQYGNFSNMPVGSNQVSLMSAQPGPYG
QGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQAN
ETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQ
TDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHE
EVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIY
HPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPAC
AEESTPASTEIKTEPEESV
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctgcccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctcctcctccagttgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataagacagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcagcag
gggtcatctagtattgcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgcattctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcggcttaataggatg
ggtcaacattcttcccacactaaagatcagtctcataggaaagagttttcaccaagtgtg
accagtcagtctgagaccaagggaaacaaaacagcacagactgagaaacagaactcaaca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatctcctttgaaaaataagctgcctgattctaaggacagtaaa
agccaggaatgtgaaagcactaaggtttctgatatcagtaagcgggatccaagacttaaa
agacatcttcaagataagtcagaggggaaggaagaggaggtcaaagaaaagaggagaagt
acagagaagaaggaaaaggaggagcataagacatgtgaacatagaccggtggggagcaga
aataaagtgattaatggtgctgttcagaaacaagacacggctacagaggagtcagaaaaa
cagggtggaaaaccaggaagatcaagtagtagaaaacggtcacggtcacgctctcctaag
gcaagatcaccatctacgcattctccaaaaagacgggagaggagatcacctaaaagacga
cttcggagtttatctcctacttcatcaactcctaaaataggaaagatacgtcagataggc
cctaaacagtctcatgttgaagaaggtacacaagcaacaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagtccaagaagaa
cgaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggagaac
gcagaaaactggcagggatccaagtcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacat
cgggaaaactggcctgctggtaaaggaattctatcaccccgaacaccaaagcagcagcac
cggttaagcgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaagatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacgtattatgaacataaagctaaactaaaaaggacacaagttcagcat
tcgttgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcgttgctttctggaatagaatgtgagcaggcaaaagccaaaaggggggtacagtttgac
agaaaagaaccatttccagaaagagcaaggagacactctcctgtaagtggcactacaaga
tcttttgctgaaaacctgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgct
actaaaggaacgagaggttctgatccttatgacagctggggagaatcagatgaatttaga
gatgctctcagacaacagggcaaaagtactgcggagttccagaaaattgatggagatgca
ctctgtaggtttgataatcgtgaggaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcgccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagattcggaggtattgaagcaaagcagaggata
actgcactgatggaagacagacctctgtttgatggctcccctagaccaactgctgcaagg
gttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatgggccgctgtcaggatcagggggagctggagccctaagattt
gatgggccgccagggcagctggcaggggccttgagatttgaaggacccccaggccaggtt
ggtggaggaggtccgatgaggtttgagggacctcttgggcctttgcggtttgaggggcct
gcggggcagcctgtgggcggtcctagatttgaaggtcctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtgctctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcagccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccaatg
gggccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccgtcaggtgctgggctcaggtttgaggggccgcatggaccgtcgggc
ggtgggaggttggaaggaccacgtggtcagccgggtctgggtcctaggttgattgatgga
ccagtccaccagggagctggtggacttagatttgatggtcctcttggtcgggctggtccg
agatttgatggctgtcacggagctggatttgatggtccgtctggacagctgtctctcctg
caaagatttgatggaattcatggacagcctggtccaaggttggcacctggccagcaggca
caagcaagatttgaaacagccatacctcaaagattcgatggacctcaccagccagcctct
aggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccatcct
gcctcaagactagaaatgtcaccatatggacaaggcggtccgttcgttgaacatcctggc
cagggctacaatggaccagctcatggaatgcagttccagagaactgatttatttgatggt
tcgcctggaccaaatttcaatgggccagctggcccaggagcacagagctttccactgaga
gcagctggacattacttcgaggaaaaaggtctccagggtcctcagtatggaaatttcagt
aatatgccagtgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttatggc
caaggtcagcagtatttgccaaatcctggaagttttgtccagaatcctgcaggagccctt
tcccattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgcaaaa
ctgctgaaaacagggatcctcaaattgtctaaaacggattccacttcagcacaagcgaat
gaaacatcggcccagccgactgctgaagaagaagatgatgatcagaatgaagatcaaaat
gttccagacctcactaacttcatagttgaagaacttagacaacgttatgatagtgttata
aatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttcacag
acagatgtgtatgcagatcatttagattggcattatcgccagaaccggacagaaaaagat
gtcagcagaaaaattacacacaggagatggtattacagtttaacagactggattgaattt
gaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcacgaa
gaggttgtgttgaagacacaggaagctgcgaaagagaaggagtttcagagtgtcccagct
gggccagctggagcagttgagagctgtgaaatttgccaagaacaatttgaacagtactgg
gatgaggaggaggaagagtggcacctgaagaatgctatcagggtagatgaaaagatttac
catccatcttgttacgaggattaccagaatacatcatcatttgattgcacaccatctccc
agcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaaaca
gaggagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcctgt
gcagaagagagcacacctgcatctacagaaatcaaaacagaacccgaggagtctgtttaa
DBGET
integrated database retrieval system
