Hirundo rustica (Barn swallow): 120765086
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Entry
120765086 CDS
T09369
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04137
Mitophagy - animal
hrt04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120765086 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120765086 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120765086 (VCP)
03009 Ribosome biogenesis [BR:
hrt03009
]
120765086 (VCP)
04131 Membrane trafficking [BR:
hrt04131
]
120765086 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120765086 (VCP)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120765086 (VCP)
Ribosome biogenesis [BR:
hrt03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120765086 (VCP)
Membrane trafficking [BR:
hrt04131
]
SNARE
SNARE associated proteins
Others
120765086 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120765086 (VCP)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120765086 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
120765086
NCBI-ProteinID:
XP_039945311
LinkDB
All DBs
Position
Z:21426435..21449700
Genome browser
AA seq
806 aa
AA seq
DB search
MASGSDSKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGTGGGSGGNVYSEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggatccgactctaaagctgatgacttatcgactgctattctgaagcagaag
aacaggcccaatcggttaattgttgacgaagccatcaatgaagacaacagtgttgtgtca
ctgtcccaggcaaagatggatgagctgcagctcttcagaggagacactgtcctgctcaaa
ggaaagaagaggagagaagcagtctgcattgttctgtcagatgatacctgctcagatgag
aagattcgcatgaatagggttgttcgcaacaacctgagagtgcgcctgggtgatgtgatc
agcatccagccttgcccagatgtgaaatatggcaaacgtatccatgtgctgccaattgat
gacacagtagaagggatcacagggaatctgtttgaggtctatctcaagccctacttcttg
gaagcttacagacctatcaggaaaggtgacatcttcttggtgcgtggagggatgcgtgca
gtggagttcaaagtggtggagacagatccaagcccctactgcatagtggctccggacaca
gtgatccattgtgagggagagcccatcaaacgggaggatgaagaggagtcactgaatgaa
gtgggctatgatgacattggtggctgccggaagcagctagctcaaatcaaagagatggtg
gaacttcccctccgacaccctgctctcttcaaggccataggggtgaagcctccacgtggg
attctgctgtatggtcctcctggcactggtaaaacactgattgcccgagcagtggccaat
gaaacgggggctttcttcttcctgatcaatggtcctgagatcatgagtaaactggctggt
gagtctgagagcaacttaaggaaagcctttgaagaagcagagaagaatgctcctgctatc
atcttcattgatgaactggatgccattgctcctaagagagagaagacacacggggaggtg
gagcgtcgcatcgtgtctcagctgctgactctcatggacgggctgaagcagagggcacac
gtgatcgtgatggcagccaccaacagacccaacagcatcgacccagcgctccggcgattc
ggtcgttttgacagagaggtagatattggtatccccgatgccactgggcgactggagatc
ctgcagatccacacaaaaaatatgaaactggctgatgatgtggatctggaacaggtggca
aacgagacccatggccatgttggcgctgacttggctgctctttgctcagaagctgctctt
caggctatcagaaagaagatggatctcatagacctagaagatgaaaccatcgatgctgaa
gtgatgaactctctggctgtgaccatggatgacttcaggtgggctctgagccagagtaac
ccttctgctcttcgggagactgtggtggaggtgccgcaagttacctgggaagatattggt
ggcctagaagatgtaaagagagaactccaggagcttgtgcagtatcccgtggagcaccca
gacaagttcctcaaatttggcatgaccccgtcaaaaggggttctgttctatgggccgcct
ggttgtggtaagacactgctggccaaagccattgccaacgaatgccaggcaaacttcatt
tccattaaggggccggaattgctcaccatgtggtttggtgagtctgaagccaacgtgcgt
gagatctttgacaaggctcgccaagcagccccgtgtgtgctcttctttgatgagctggac
tccatcgccaaggcccgaggtgggaatattggtgatggcggtggtgctgcagatcgtgtc
atcaaccagatcctgaccgagatggacggcatgtccaccaagaaaaatgtcttcatcatc
ggtgccaccaacaggccagacatcattgacccagccatcctgcgccccggccgcctggat
cagctcatctacatccccctgcctgacgagaagtcccgggttgcaatccttaaggccaat
ctgaggaaatcgccagttgcaaaggatgttgacctggatttcctggctaagatgaccaac
ggcttctcaggggctgaccttacagaaatttgccagcgtgcctgcaaactggccatccgc
gaatccatcgagagtgagatcaggcgagagcgtgagaggcagaccaacccttctgccatg
gaggtggaggaggacgatccggttcccgagatccgcagggatcactttgaggaggctatg
cgctttgctcgccgctctgtcagtgacaatgacatcaggaaatacgagatgtttgcacag
accctgcagcagagccgtggctttggcagcttcaggttcccatcaggcaaccagggcggc
gccggtccaagccaaggcacaggaggtggcagcgggggcaacgtgtacagcgaagacaat
gacgacgatctctacggttaa
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