Hirundo rustica (Barn swallow): 120765212
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Entry
120765212 CDS
T09369
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120765212 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120765212 (MTREX)
03041 Spliceosome [BR:
hrt03041
]
120765212 (MTREX)
03009 Ribosome biogenesis [BR:
hrt03009
]
120765212 (MTREX)
03016 Transfer RNA biogenesis [BR:
hrt03016
]
120765212 (MTREX)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120765212 (MTREX)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120765212 (MTREX)
Spliceosome [BR:
hrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120765212 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120765212 (MTREX)
Ribosome biogenesis [BR:
hrt03009
]
Eukaryotic type
Pre-60S particles
Helicases
120765212 (MTREX)
Transfer RNA biogenesis [BR:
hrt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120765212 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120765212
NCBI-ProteinID:
XP_039945742
LinkDB
All DBs
Position
Z:complement(12868720..12912376)
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEDDAAAAASGAKKSKTGPAEGARRPGKRLEEKPSVQAIVKPKREIEI
DSTEHVILGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGI
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggacgacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccctgccgagggtgccaggaggccgggaaaa
cgattggaagaaaagccttcagtacaagcaatagtcaagccaaaaagggaaattgagatt
gatagtactgaacatgttattttgggaaaaaaaccaaaattggaagatgttttatcagaa
gatgtgaatctgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgttgaa
ggctgtacacatgaggttgcgcttccagcaaatgaggaattcacaggtctgaagcccaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataatcagtctgtgttagtgtcagctcacacctcagctggtaaaact
gtctgtgctgagtatgcaattgccctggctttaagggaaaagcagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatccaacagcatcttgtttggtaatgaca
actgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgcatgg
gttatttttgatgaaattcactacatgagagatacagagcgtggtgtggtttgggaagag
actattattttgcttcctgataatgtacattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggcggagatggactc
catctggttgttgatgaaaatggcgatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaaaggaggaata
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaagaaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagacttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctcagatgaagacaaaaagcttcctcaggttgaacacgtgcttccccttctg
aagcgaggaattggtattcaccatggtggtttgcttcctatcttaaaagaaaccatagaa
atccttttctcagaaggcctaataaaggccttatttgcgacagagacttttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaggat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggc
atggatgacaggggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcccttaaacagtgcgttccacctgacgtacaac
atggtactgaacttacttcgagtagaggaaattaaccctgaatacatgttagaaaaatca
ttttatcagttccaacattacagaaccattccggaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtcatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtgaaggtgaagaatgaaggtgatgac
tatggatggggtgtggttgttaatttctctaagaaatcaaatgttaagccaaattccggt
gaattggacccattgtacgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtctcagctatcagcagtgtccgactctacataccaaaa
gacctgaggcctattgataacaggcaaagtgtgctaaaatctgtacaggaagtacagaaa
cggtttcctgatggagtgcccttgcttgaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcgcagatt
gctatggatattaaagtagcaaagcgagaattaaagaaggccagaactgtcctgcaaatg
gatgaactcaaatgccgcaagcgtgtgttgagaagactggggtttgccacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acggaaatgatgttcaatggtctcttcaatgacttgactgcagaacaagcaactgcacta
ctcagttgttttgtttttcaagagaattccagtgaaatgccaaaattgactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatggat
gtcgtatatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgctgcatgaggcgtctagaagaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagagctggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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