Hirundo rustica (Barn swallow): 120765308
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Entry
120765308 CDS
T09369
Symbol
YTHDC2
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120765308 (YTHDC2)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120765308 (YTHDC2)
Spliceosome [BR:
hrt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120765308 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
AAA_19
nSTAND3
HA2_N
Ank_2
ATPase
AAA_22
Ank_4
PhoH
Ank
AAA_23
AAA_7
AAA_16
AAA_30
SRP54
ResIII
AAA_29
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
120765308
NCBI-ProteinID:
XP_039945951
LinkDB
All DBs
Position
Z:complement(59575237..59607819)
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AA seq
1420 aa
AA seq
DB search
MSRPRNVPPRQHGGGAASSGAPAAPGRGRGGRGLRDIRVDEEVEIAVNLSLERFRYGEDA
EMEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAXMTCALTPG
TKHVVNTLIWNFPVTNKERTELLPKTERGNACAVGSENKEGNKTSGWHSDGIPQVPVKRE
ESKFDSFRESLPDFEKQKEIVKXIKDHKVVLIVGETGSGKTTQIPQFILDDCRKNGTPCG
IFCTQPRRLAALAVPERVAAERREKIGQTVVCQVQLESRVSPKTLVTFCTNGILLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLILSSAALDADLLIRYFGC
CPVIHIQGRSFEVKEMFLEDILRSTGYTEKEMVKYKKEKQQEEKQQSTLTEWCSAQENNS
KLEPGRPRSVPRATEECDDGHTVVFSLQTEKDVNCLELWLTKEMDSCLSDIWLHKDIDAF
AQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGADIHCRSSNGWMAVD
WAKHFGQTEVVALLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTPYHHRFFEDEKV
DLDLIMHLLYNICHSCESGAILVFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLHSN
MQTLDQKKVLKSPPLGMHKIILSTNIAGTSITASDVVFVIDSGKVKEKSFDALSCVTMLK
MVWISKASAIQRKGRAGCCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLQA
PINCPVVDFLMKAPDPPPALIVENALQMLKTVDAMDPWEDLTKLGYHLTELPVEPHLGKM
VLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSNHTVLLRAF
QAWQKXSGGWEKAFCKKNFLSQATMXIIVGMRTQQLLGQLRASGFVRARGGADIRDVNAN
SENWAVVKAALVAGMYPNLVHVDRENLVLTAPKEKKXQFHPTSVLSQPQYKKIPPVNGQT
AAVQALPIDWLIYDEMMRAHRIANIRCCSVVKPITVALFCGPTRLPRNALQASSSCQGDK
VSSDSSDSEMEGKTTSNASLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRCMRAPSKX
MSQVGEATVRAVVAVLTAEEQSAGLQQPSGIGQRPRPVGSEDCLLASTWRSTNTRRSTAE
AEFSDSSNAEKVLMKSTHPMLHQPKKYKQKSILYSKQTSDDRSDCSSVKSADSSSFPSPC
ASPSFPISGKASKSPSPRQNMAVRYFIIKSSHLQNLEISQQKGIWSTTPSNERKLNGAFW
ESSMVYLIFSVQGSGHSRXGFARMGSSTGCEKSQDWGSAGFGGVFKVEWIRKESVPFQFA
HHLLNPWNDNKKVQISRDGQELEPQAGEQLLQLWDHIPSE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaggaacgtcccaccgcggcagcacggcgggggcgcagcgagctcgggc
gctcccgccgcgccgggccgcggccgaggtggcagaggtctgagggatatccgcgtggac
gaggaggttgagatcgcggtgaacctctccctggagcggttccgctatggcgaggacgcg
gaaatggaatttccgtcttctttcactagaaccgaaagagcgtttgttcaccggctctgt
cattctcttggactgatatcgaaaagtaaagggaaaggagcaaatcgatacctgactgta
agaaaaaaggatggatcagaactaaaacgtgcangtatgacttgtgccttgactcctggt
acaaaacatgttgtcaatactttaatttggaattttcctgtcacaaataaagaacgaaca
gaacttctgccaaagacagaacgaggaaatgcctgtgctgttggatcagaaaacaaggaa
gggaacaagacaagtggatggcatagtgatggtatcccccaggttcccgtgaaaagagag
gaatcaaagtttgattcctttagggaatcactaccagattttgaaaaacagaaagaaatt
gttaaanatataaaggaccataaagttgttttgattgtaggagagactggatcaggaaaa
actactcaaatcccccagtttattcttgatgactgtcgcaaaaatggaactccctgcggt
atattttgcactcagccaagacgtttggcagcacttgctgtgcctgaaagagtggcagct
gaaagaagagaaaagattggccagacagttgtttgtcaggtgcagttagaaagcagggtt
tctccaaagacgctggtaaccttttgtactaatggcatactgcttcgcacgctgatggca
ggagacagcaccctgtcaactgtgacacatgttattgtggatgaagtacatgagagggat
aggttcagtgacttcttgctaataaaactgagagatgtgttgcaaagccaagctaattta
aaactaattctttctagtgctgctctagatgcagatctccttattagatattttggatgt
tgcccagtaatacatatccaaggaagatcttttgaagttaaagagatgtttttggaggac
attttacgaagtactgggtatacagagaaagagatggtgaagtacaaaaaagagaagcag
caagaagaaaaacagcagagcactcttactgagtggtgttctgctcaagaaaataatagt
aagctggaacctgggagaccaaggtctgttccgagggcaactgaagagtgtgatgatggt
cacacagttgttttttctcttcagactgaaaaagatgtgaattgccttgaactatggtta
acaaaagaaatggattcttgtctttctgacatctggttgcataaagatattgatgccttt
gctcaggtgttccatctcattttaactgaaaatgtcagtgttgattacaggcacagtgag
accagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaagtagagcag
ctgatcagtatgggagcagatatccactgcagatcatctaatggctggatggctgtggac
tgggctaagcactttggacagacagaggttgttgccctgttggaatcctacagtgcttca
gcaggatttggaaatctggatgaaagttccctggtccgaacaagtggtagtgacctcagt
gcagaggacagagagctgttgacaccttatcatcacagattttttgaggatgaaaaagtg
gatctggacctcattatgcacttactttataacatctgtcatagttgtgagagtggagcc
attttagtatttcttcctggatatgatgagatagttagcctgagggaccgtattcttttt
gatgacaggagatttgctgacaacgctcacagatatcaggttttcatgcttcattcaaat
atgcagactttggatcagaagaaagtgcttaaaagtccacctcttggtatgcacaaaata
attctttctacgaatatagcaggaaccagcataacagccagtgatgttgtatttgttatt
gactcaggcaaggtgaaagagaagtcttttgatgcactgagttgcgttacaatgctaaaa
atggtatggatttcaaaagccagtgctatccagagaaaaggcagggctgggtgctgtcag
cctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgttggaatttcag
actccagaacttctaaggatgccacttcaggagctttgtttacacacaaaacttcaagct
ccaattaattgtccagtcgttgactttcttatgaaagctcctgatcctccaccagcttta
attgtggaaaatgctctgcaaatgctcaagactgtagatgccatggacccttgggaagat
ctcactaaacttggttatcacctcactgaattgccggtggagccacaccttggtaaaatg
gtgttgtgtgccgttgtgttgaagtgcctggatcctgttcttaccattgcctgtgctctt
gcctaccgagacccttttgtgctgcccacgctggcctctcagaagcgtgcagccatgctg
tgtaggaaacgttttactgcgggaaccttcagcaaccacacagtgcttctcagggctttt
caggcatggcagaagngcagtggtggctgggagaaagctttctgtaaaaagaacttcctg
tctcaagccacaatgtaaatcatcgtaggaatgagaacacagcagttgcttggccagctt
agagcctcaggttttgttagagccagaggaggagctgatattagagatgttaatgctaat
tctgaaaactgggctgtagttaaagctgccctagtggctgggatgtatcccaatcttgtg
catgtagacagagaaaacctggttttaactgcaccaaaggagaaaaaantgcaatttcat
cctacctctgttcttagtcaacctcagtataaaaagattcccccagtgaatggtcaaact
gcagctgttcaggcactccctatagactggctgatatatgacgaaatgatgagagctcac
aggatagcaaacatcaggtgctgttctgttgtaaaacccatcactgtggctctcttctgt
ggaccaactaggttaccaaggaatgctttacaggcatcttcatcctgtcaaggagacaag
gtatccagtgatagcagtgacagtgagatggagggcaaaacaacttctaatgcgtcacta
ctgaagctagatgaatggctccacctcaaactggactcggaagctgctggtttgctgttg
caactgagacaaaagtggcatagcttatttctgcgttgtatgcgagctccttctaaantc
atgtctcaagttggtgaagcaactgtaagagcagttgtggctgttttaactgctgaagaa
cagtctgcaggtttgcagcagccttcaggaattggtcagaggccaagacctgtgggttct
gaagattgtcttttagcatctacgtggaggtcaactaacaccaggagaagtacagcagaa
gctgaattctctgactcctctaatgctgaaaaagttctaatgaagtctactcatcccatg
cttcatcagccaaagaagtacaaacaaaaaagtattttatactcaaaacaaacttcggat
gacaggtcagattgctcatcagtgaagtctgcagacagcagtagcttccctagcccctgt
gctagtccatcctttccaatatccggaaaggcttccaaatcgccttcaccaagacaaaat
atggcagttcggtactttataataaaaagtagccacttgcagaaccttgagatttctcag
cagaagggtatatggtccactacaccaagtaatgaacgaaaactgaatggtgcattttgg
gaaagcagcatggtttacttaatattttctgttcaagggtctggacactccaggtgaggt
tttgctagaatgggttcatcaacagggtgtgagaaaagtcaggactggggatctgctgga
ttcggaggtgtatttaaggtggagtggatccgaaaagaaagcgttccttttcagtttgca
catcatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggccag
gagctggaaccacaagctggagagcagttgctgcagctttgggaccatattccttcagaa
tga
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integrated database retrieval system
