Hirundo rustica (Barn swallow): 120765516
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Entry
120765516 CDS
T09369
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hrt03036
]
120765516 (SHOC1)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120765516 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
120765516
NCBI-ProteinID:
XP_058280101
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All DBs
Position
Z:65296198..65349052
Genome browser
AA seq
1464 aa
AA seq
DB search
MLKTSQTKMFAALKYHSTDYLYESMARQKFSIWKLSLCFPPCLYQDEKYHLNGLFADDKY
RKPWTRICSTQNMIAISVLDQWKKSLPVEDFLEKKPISSVEFHTSNDLIEVIPSSNPYSQ
TNTEECFLLMKNGFKEDTTQDKYLKIYYAAEFKGPRQDLCLEEELVFIDNLETFRKKLPA
LSILLSRLQFFFVKDPLLDSGGKILTAENIFRECLSFQNGMKIEESQNELQGIKENFCTI
SIKEEEYFLLPVELEFGKPNNSRSDYVKIPSYLQLKEVLSLAPVTVDDEDVCKQVSREDL
KAEITYKTEISKYCAIPQEVCSSISTSMLEFCESAVYIPYLKDEMEVPLTPPCRQQRSWV
NFPCRGIEEEPISLSGNSILIADPSREFLESLVWQSEKYRDNMSSLLLVEHPAVNLAHQH
PSLTELQKELPVEVEAPVLGSLEEGWWLHRSLNPAAVEILEQLNMDGNNANSLLHTEVET
FTPFTSYQLERWLEEKNSMTNQELLSAERHHSEKVINPDLSQKIARQYFAMGTATSAKIH
STNTSVEELSGGSIRKIKTEEAICFLNQEKKIPKPSELDSCKDVSSKLENSSCSGKPASL
ALASRWANDDSDLNNFIMMRYKHTVTQREENYYVDRSEKVAQPEEQHMRAHKEEDSFCET
VKTEEKTQESEDSITVNVQPSESQCQAYHLLEGAAIPVLKDLTHLGVLPSVTWSFDSVKF
DHTRFFLKQQEKVICDNFKQGKIDEKEIMLFRHAALVHLLVTIRDLLLTCGLDTALGYLS
KAKDIYKNILESCLNNIWRQLKVVQYSSQKKHETHPKITALQCEMLNWMKSCGEKHSVKI
LIITRMDSEREKSVFIHPLSRIEAGLKAVDLNNEKKGSPLNCKDIISSLSRYSCVIVHNQ
QIGADFPWTHFSLVMEYDYSENSGWRNLCKNLNVPYMTFKTTLPETIQMGNHGSSFLLEV
QIPYVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGSIDRYVVLTIDACTAIF
LQSMEELNYEDSCDTVISRLMALSLQYTCCWIIFYSRKRLSLEYSLKGNTLLNLVLIYAT
LIELTQKSEDFEVKVILMLGIEETTLVIRQIADNILMASNISPHEWLDKSWLSILPSETE
KFLLTFPCINPLVAQFMLKKGSSLNRLFLANFCQLQELLPEVPKKVLKHFSDIISSYSLN
TAAPLEKTVKGASHPEKQNNFNTLCPDNKQNCQILELLDKAQNSTGTSHSNSEALIPPLN
YHKGFLKSDLASCMQKKACSSEVVTRRKSNFFAVSKDYEDFAHPEVKNSLHVQRQPLRMH
DSSGHSSNDTEKEDFFAAFSDCIPQKSSRSFLEEFRDKAFKNPEIQIDQPLWNDSSSTGL
HNSFAHDSFLSDFFDDTDELQNLSFNQIGGASKGKRKQRPPFLSRKEKVKKDVGFPEVKE
FKKRRLTYERVPGRRDGQTRLKFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaacatcacaaaccaagatgtttgcagctttgaagtatcactcaacagactat
ttatatgagagcatggcaaggcagaagttttccatctggaaattgtcactttgctttcct
ccctgtttatatcaagatgaaaagtatcatctcaatggactctttgctgatgataagtat
aggaagccgtggactagaatttgttcaacacagaacatgattgctatttcagtactggat
caatggaagaaaagtttacctgtggaggatttcttggaaaagaaacctatctcctctgta
gagtttcatactagtaatgatttaatagaagttattccaagttcaaatccttactctcag
actaacacagaagaatgttttttacttatgaagaatggttttaaggaagacaccacccaa
gacaaatatttgaagatttactatgctgctgaatttaaagggccacggcaagatttatgt
ttggaagaggagttggtttttattgataatcttgaaacttttcgtaaaaaactgccagct
ttatctatacttctgagcagactacaatttttttttgtgaaagatccccttttagattcc
ggagggaagattttaacagcagagaatattttcagagaatgtttgtctttccaaaatgga
atgaagatagaagagagtcaaaatgaattgcaggggattaaagagaatttctgtactata
tctataaaagaagaagagtatttcctgttgcctgttgagttagaattcggcaaacccaac
aatagcagatctgattatgttaagattccatcatacttgcaactaaaggaggtgttaagt
ttagctccagtcactgtagacgatgaagacgtttgcaaacaagtgagcagagaagatctc
aaagcagaaattacatacaaaacagaaatttccaagtactgtgccatcccacaagaggtt
tgctccagtattagcacaagtatgttggaattctgtgagtcagctgtatatattccatat
ttgaaagatgaaatggaagtgcctttaactcctccatgcagacaacaaagatcatgggtt
aattttccatgcagaggaattgaagaagaacctatttctctctctggtaacagtattttg
attgcagacccctctagggaattcttagaatctttggtgtggcagtcagagaagtatcgg
gataatatgagctctcttttgcttgttgagcatccagctgttaaccttgcacatcagcat
ccttcactgacagaactgcagaaagagctgccagttgaggtcgaagcaccagtgcttggc
tcactagaggagggttggtggcttcataggagtttaaatccagcagctgtagaaattctg
gaacaattgaatatggatggaaataatgcaaacagtttacttcatacagaagtagaaaca
ttcacaccatttacatcatatcaattagaaagatggcttgaagagaagaattctatgaca
aaccaagagctgctttctgctgaaagacatcactcagagaaagtgattaatcctgacttg
tcacagaagattgcaaggcagtactttgccatgggtacagcaacatctgcaaaaattcat
agtacaaatacatctgtggaagagcttagtggaggaagcataagaaagattaagacagaa
gaggcaatttgtttcttaaaccaagaaaaaaaaatccccaaaccatctgaattagacagc
tgtaaagatgtgtcttctaaactggaaaactcatcctgtagtggaaagcctgcatcactt
gcacttgcttctagatgggctaacgatgactctgatctgaacaactttattatgatgaga
tataaacatacagtcacccaaagagaggaaaattattatgtagatagatctgaaaaagta
gcacagcctgaagagcagcatatgcgtgctcacaaagaggaagattctttttgtgagaca
gtaaaaacagaggaaaaaacccaagagagcgaagacagtatcactgtcaatgttcaacca
tcagaaagccaatgccaggcataccacctcctggaaggagcagccattcctgtactaaaa
gacttgacacatctgggtgtacttccttctgttacttggagctttgacagtgttaaattt
gatcacacaaggtttttcttaaagcagcaagagaaagtgatatgtgataattttaagcag
ggtaaaatagatgagaaggagatcatgctgttcagacatgctgctctggtacacttgctg
gtgacaattcgagatctgctactaacatgtggcttggatacagctctaggttatttgtcg
aaggcaaaagatatctataaaaatattttagaatcctgtttgaataacatctggaggcag
ttgaaggttgtacagtacagcagccagaaaaagcatgaaacacatcccaaaataacagca
cttcagtgtgaaatgttgaattggatgaaaagttgtggagagaaacacagtgttaagata
ctaatcattacaaggatggactctgaaagagaaaaatctgtcttcattcacccattatct
aggatagaagcaggtttgaaagctgtggatttgaataatgagaaaaagggaagcccttta
aattgtaaagacatcataagcagtcttagtagatattcctgcgttattgtacataatcag
caaattggagctgacttcccttggacacacttctcattagtaatggaatatgattattct
gaaaattctggctggagaaatctgtgcaaaaatctgaatgttccttacatgacttttaaa
accaccctccctgaaacaatacaaatggggaatcatggtagttcctttcttctggaagta
cagattccatatgtatttctgacaactgaaggtcttcttaatatgccagatattcttcag
ctttttgaatccaagtacagcattacctttgttgaaagaagcagtagttactccttaagg
ctctttggaagtatagatcgatatgttgtgttgacaatagatgcatgtactgctatcttt
ttacagagtatggaagaactaaattatgaagactcctgtgacactgtaatatcgaggctg
atggcattatcactccaatatacgtgctgttggattattttctattccagaaaaagactg
agtttagagtacagtctcaagggaaatactctccttaaccttgtcttaatttatgccact
ctaattgaacttacacagaagtcagaagactttgaagtgaaggtaattcttatgctgggg
attgaagagacaacactggtaattcgtcagattgctgacaacattttgatggcatctaat
atcagtcctcatgaatggctggataaatcctggctttctatcttaccatctgagacagaa
aaattcctgcttacttttccatgtattaatcctttggttgctcagtttatgttaaagaag
ggatcttcactgaacaggttatttcttgcaaacttttgtcagctccaagaacttctgcca
gaggttccaaaaaaagttttaaagcatttcagtgacataatatcttcatacagcctaaat
actgctgctcctttagaaaaaactgtgaaaggtgcatcacacccagaaaaacagaataac
ttcaacacattgtgtcctgataataaacaaaattgtcagattttagagctgcttgataag
gcacaaaacagcacaggaacgtctcattcgaattctgaagccctaattcctccactgaat
tatcataaggggtttttaaaatctgatcttgcaagttgtatgcaaaagaaagcatgctca
tcagaagtagttacaaggaggaagtccaatttctttgctgtatcaaaggactatgaagat
tttgctcatccagaagttaaaaattctctccatgttcaaagacagcctttgaggatgcat
gatagctctggtcattcttctaatgacactgaaaaagaggatttctttgcagctttcagt
gactgtatacctcagaagagctctaggagttttctagaggaatttagagacaaagcattt
aaaaacccagaaattcagattgaccagcccctgtggaatgactcttcatccacaggccta
cataattcatttgctcatgatagttttctctctgatttctttgatgatacggatgagctt
caaaatctgagttttaaccaaataggtggagcatctaaaggaaagagaaaacaaaggcct
ccattcttatcgagaaaagaaaaagttaaaaaagatgtaggatttccagaagtaaaggag
ttcaagaaaaggagattgacatatgaaagagtccctggaagaagagatgggcaaacacgt
cttaaattcttttga
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