KEGG   Hirundo rustica (Barn swallow): 120765743
Entry
120765743         CDS       T09369                                 
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
hrt  Hirundo rustica (Barn swallow)
Pathway
hrt03420  Nucleotide excision repair
hrt04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hrt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120765743 (ERCC8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    120765743 (ERCC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hrt04121]
    120765743 (ERCC8)
   03400 DNA repair and recombination proteins [BR:hrt03400]
    120765743 (ERCC8)
Ubiquitin system [BR:hrt04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120765743 (ERCC8)
DNA repair and recombination proteins [BR:hrt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120765743 (ERCC8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD_LRWD1 NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 eIF2A Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 120765743
NCBI-ProteinID: XP_039946844
LinkDB
Position
Z:10778198..10806820
AA seq 399 aa
MLGLMAARQAGLDDPERLRRAERTRRVLSLELNKDRDVERIHGSGINTLDIEPIEGRYML
SGGSDGVIVLYDLENLSRKPSYTCKALFSVGRSHPDVHKFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTNTLQPADIFHFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSSSH
ILQGHRQEVLAVSWSPRHEYILATGSADGRVKLWDVRRASGCLSTLDQHNGEKSKASSET
ANTAHNGRVNGLCYTNDGLHLLTIGTDDRMRLWNSSTGENTLVNYGKVCNESRKGLKFSI
SCGCNPEFAFVPYGSTIAVYTVFTGELITMLRGHYSTVNCCVFQPHFQELYSGSKDCNIL
AWIPAPREPVPDDISEKSLPQQHLNPAYEDAWSSSDDEG
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgttggggctcatggctgcgcgccaggccgggctggacgaccccgagcggctgcgccgg
gccgagcgtacccggagggttctaagtttggaattaaataaagatagagatgtggaaaga
atacacggaagtggtatcaacacccttgatattgagcctattgagggaagatacatgtta
tctggtggatcggatggtgttattgtactttatgaccttgaaaacttgagcaggaaacca
agttacacgtgtaaagcacttttttctgttggaaggagtcatcctgatgtacataaattc
agtgtggagacagtccagtggtatcctcatgacactggcatgtttacatcgagctcattt
gataaaaccttgaaaatatgggatacaaatactttacaacctgcagatatatttcacttt
gagggaacagtctatagccatcacatgtctccagttgctacaaagcattgtttaatagca
gttggtaccaaaagccccaaagtacagctttgcgacttgaagtctggatccagttctcac
attctgcagggtcacagacaagaagtattggcagtgtcgtggtccccacgtcatgaatat
attttggcaacaggaagtgctgatggtagagtaaaattatgggatgtcaggagagcgtct
ggatgtctgagtacacttgaccagcacaatggggaaaagtccaaagcatcttctgagaca
gcaaacactgctcacaatgggagagttaatggtttatgctatacaaatgatggacttcac
ctgctaaccattggcacagatgatcggatgcgactctggaacagctccactggagaaaac
accttagtgaactatgggaaagtctgtaatgaaagtaggaaaggactcaaattttccatc
tcttgtggctgtaatccagagtttgcctttgttccatatggaagtaccattgctgtttat
acagttttcacaggggagctgataactatgcttagagggcattatagtactgtcaactgc
tgtgtatttcaacctcattttcaggaactttatagtggtagcaaagactgcaatatcctt
gcgtggataccagctccgcgagagccagttcctgatgatatttccgaaaagtctctgcct
caacaacatttaaatccagcatatgaagatgcatggagcagcagtgatgacgaaggctga

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