Hirundo rustica (Barn swallow): 120766121
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Entry
120766121 CDS
T09369
Symbol
PALB2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03440
Homologous recombination
hrt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120766121 (PALB2)
03460 Fanconi anemia pathway
120766121 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120766121 (PALB2)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120766121 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
120766121 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
120766121
NCBI-ProteinID:
XP_039947419
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Position
15
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AA seq
1335 aa
AA seq
DB search
MEAPAAAAALSGADKEKLREKLALLRREYSETVIRLRRARRAERARSHGRRERSPPGGSR
GERDVPGPQCSDPDCSRDNTSPSAERSGPSQLQTKTCSGADTEKTTSVTVKHVPEFSSGE
VSPQDSSRAESFQASQEDLCCGIIRHAPVEKKPQTSRGMMKLRRRTKALEPKERESVHDV
HPIGAGEMMKNQVASAEELQSPVFRRSSPLHTEEPAQRAPGTVLVQGERNSFTPDAASGL
VQDEFESSVTAGEPELSPHALRDSRDICQPQSSGAVATPDRREPCSQHGDSVLLDPKGDG
REESPGIIKQPECQSLCEDQGELHGLLDLMSENETLPGSRSNTLSKESKNREGHQSDTNT
LNPCSADNALDNAEELLENQQLEIQSRLSPADKAAAPEGMLSSCTVVEGLLFPVEYYIRT
TRRMSNCQRKVDLEAVILSQLGRSKKGQRSKYKQKDANPNQPSQERDEDDLEPGVVPFPF
LGAENNQANSSSSQKSLPASSSSSTSLESISQKSITGTRQEQRQSQRKQKGRRKSACKAP
MPPVSQELIESQDPTMASGSSALLSNENQSEKENRDANLEKPSSDERRLSGAAALGSAGT
GVAGAAQEGPDPPPGGIQMLGRCHEAQLEQVQNPLRSSDSLSPGSDALASPVGDVEANAP
VGQGGKHPAQRAKRQRGACGAEPLPGVSVPVRRSLRCSARHGVQTRSPDESSRGHSCPMG
SQGPAALGLPAEDPDTRGSLFSFRSLQWLVPKLGIRDFHLPNEEFGVLKLEKLKSSPVND
LEDFVSGDGVAPEGAPDALMKPKEKSLRSNLILPSKSGLPELPCMESPTSKKKLSTHELL
FTPMGTVLAEAPTHPESQISSSVFPAVGATPGVLPSVHSEVIPDTPSVPALSATPPSPRG
AAALVLGDVAPRDPAVPLHPGSCAAEAARNQEEQGATFPSAAERGPENKSDETVSLEKHQ
PSENKEQESCRASPEQKKDVAEQLTPVLXDGPREESLQFVSELKDSSCSCAVDVSTVWWA
AAGCRELRVVTASESAVSLWEPLAPDCWGRVHTWHLREIPVIQIVPLPDTCNLVCVALGE
LEIGEIRLLLYSSETDSFKHSLVKTGNIKAVVGLKDQRLVSSSRTMQEQQLEMVSLSETG
GSKDRQTLMPPEETVTAFAEVEGMREALVGTTAGNSVVVWNLKTGQLLRKMHVGYSYPAS
ICHRAYSDSGLLFVVLSHPHAKESESCGSPAFRVVAFNPRTGRSAGVMFSCLPPGRAGRY
LEGDVWDTAGAAVLTSGAVAVWDLLRGRCTAVLAPSPAGPWALARWAAGGAALLAGHRNG
TVRMYRYRPPQPGAA
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccggcggcggcggcggccctgagcggcgccgacaaggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtcatccggctgcggcgagcgcgg
agagccgagcgagccaggagccacggccggcgggagcggagccccccaggcgggagccgg
ggagaacgggatgtaccaggtccgcagtgctccgatcctgactgttctagagataacaca
tctcctagtgctgagaggagtgggccctctcagttacagactaaaacctgctctggtgct
gacacagagaagacaacatctgtcacagttaagcatgttccagaattctccagtggtgag
gttagcccgcaggacagctcccgggcagaaagctttcaggccagccaggaagacctgtgc
tgtgggatcatcaggcatgcccctgtggagaaaaagccccaaacctcccgaggcatgatg
aagctgcggagacggacgaaggctctggaaccaaaggaaagggaatcagtgcatgatgtg
catccaatcggtgctggtgaaatgatgaaaaatcaagttgccagtgcagaggagcttcag
tcaccagtgttcaggcgcagcagccccttgcacactgaggaacctgctcaaagggcacct
ggaactgtgcttgtgcagggagaaagaaatagtttcactcctgatgcagcatcagggctt
gtacaggatgagtttgagagcagtgtcactgcaggagagcctgagctgtccccacatgcg
ctgagggacagcagggacatttgtcagcctcagtcctcgggggctgtggccacacctgat
agacgtgagccgtgttcgcagcatggagactctgtattacttgaccccaaaggtgatggc
agagaagaatcccccggtataataaaacagccggagtgtcagagtttgtgtgaagatcag
ggagaattacatgggctcctggatttaatgtcagaaaatgaaacgttgcctggcagcaga
agtaacaccttaagcaaggagagcaaaaaccgtgaaggacatcaaagtgacactaatacc
ttaaatccctgttctgcagataatgctctggacaatgctgaagaacttctggagaatcaa
cagcttgaaattcagtcaaggctttctcctgctgacaaggcagcagcccccgagggcatg
ctgagctcctgcacagtggtggaggggctgctcttccccgtcgagtactacatccggaca
acgcgccgcatgtcgaactgccagaggaaggtggacctggaggctgtaatcctcagccag
ctgggcaggagcaagaaaggtcagcgcagtaaatacaagcagaaagatgcaaaccccaat
cagccctctcaagagagagacgaggatgatttggagccaggagttgtgcccttccctttt
cttggggcagagaacaatcaagcaaactcaagtagttctcagaaatctcttcctgcgtcc
agcagcagcagcacttctcttgagtccatttctcagaaaagcatcactggcacaaggcaa
gagcagagacaatcccagaggaaacagaagggaagaagaaagtctgcctgcaaagcaccc
atgcctccagtgtcacaagagctaatcgagagtcaggatcccacaatggccagtggaagc
agtgctctgctgtcaaatgagaaccagagcgaaaaggagaaccgtgatgctaaccttgaa
aagccatcctcagatgagaggaggttgtctggtgctgcagcactggggtctgcagggaca
ggagtggctggagctgcacaggagggtcctgaccctcctccgggcgggatccaaatgcta
ggcagatgccatgaggctcagctggagcaggttcaaaatccgctccgcagcagcgattct
ctgagcccggggagcgacgctttggccagccctgtgggagatgtggaagccaacgctcct
gtgggtcagggaggtaaacatccagcgcagcgagcgaagaggcagcgaggagcctgtggg
gctgagccgctccccggggtcagtgtccctgtgcgccgctccctgcgctgctctgccaga
cacggggtccagacacgctcaccagatgagagcagcagaggacacagctgtcccatgggt
tcacagggtcctgctgcccttgggctccctgctgaggaccccgacactcgtggctccctc
ttctccttccgcagcctccagtggctggtccccaagctgggcatcagggacttccactta
ccaaatgaggagtttggagtactgaaactggagaaattgaaatcttcccctgtgaatgac
ttggaggattttgtgtctggggatggtgtggctccggagggcgcaccagatgcactaatg
aagccaaaagaaaaaagtctcagaagtaatttgattttgccttccaaaagtggattgcct
gaactcccttgcatggaaagcccaacttccaagaagaagctttccacccatgaattgctg
tttactcccatggggactgtcttagctgaggctcccactcaccctgagtctcagatttcc
tcgtctgttttccctgctgtgggtgcaaccccaggtgttttaccttcagtgcacagtgag
gttatccctgacacaccttctgtacctgccttgtcagcaaccccaccttcccctagagga
gcagctgccctggtcctgggggatgtggctcccagagaccctgctgtgccactgcacccc
ggcagctgtgctgcagaggctgccaggaaccaggaggagcaaggtgcaacatttccttca
gcagctgaaagaggtcctgagaataaatccgatgagactgtgtccttggagaagcatcag
ccgtcagagaacaaagagcaggaatcctgcagagcttcacctgaacagaaaaaagatgta
gcagaacagttgactccagtgctgncggatggccccagagaagagagcttgcagtttgtg
tcagagctaaaggactcgtcgtgctcgtgcgctgtggatgtgagcacggtgtggtgggca
gcagccggctgcagggagctgcgagtggtcaccgcctccgagagcgccgtgtccctctgg
gaacccctggcacctgactgctggggaagggtccacacctggcacctgagagagattcct
gtaatccagattgttcctctgccagacacctgtaaccttgtgtgtgtagcactgggagag
ctggagattggagaaataaggctcttgctttattcttctgagactgactcattcaagcac
tccctagtgaaaactgggaatataaaagcagttgttgggctaaaggaccagaggctggtg
agcagcagcaggaccatgcaggagcagcagctggagatggtttcactctctgagacaggg
gggagcaaggacaggcagactctgatgccccctgaagaaactgtcacagcctttgctgaa
gtagaagggatgagagaggccttggtgggcaccactgcagggaacagcgttgtggtttgg
aatctgaaaacaggtcagctcttgaggaagatgcatgttggttattcctacccagcttcc
atctgccatcgagcgtattctgactctggccttttgtttgttgttctaagccatcctcat
gccaaagagagcgagtcctgtggaagcccagcattccgtgtggtggccttcaacccccgc
accggccggagcgcgggggtgatgttctcctgcctccccccgggccgtgcaggcaggtac
ctggagggtgacgtgtgggacaccgcgggagccgcggtgctgacctcgggtgccgtggcc
gtgtgggacctgctgcggggccgctgcacggcggtgctggccccgagccccgcggggccc
tgggcactggcccgctgggccgccggcggggccgcgctgctggccgggcaccgcaacggc
accgtccgcatgtaccggtaccggcccccgcagccgggagccgcctga
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