Halovivax ruber: Halru_0392
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Entry
Halru_0392 CDS
T02402
Name
(GenBank) DNA helicase, Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hru
Halovivax ruber
Pathway
hru03022
Basal transcription factors
hru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Halru_0392
09124 Replication and repair
03420 Nucleotide excision repair
Halru_0392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hru03021
]
Halru_0392
03036 Chromosome and associated proteins [BR:
hru03036
]
Halru_0392
03400 DNA repair and recombination proteins [BR:
hru03400
]
Halru_0392
Enzymes [BR:
hru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Halru_0392
Transcription machinery [BR:
hru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Halru_0392
Chromosome and associated proteins [BR:
hru03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Halru_0392
DNA repair and recombination proteins [BR:
hru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Halru_0392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
AAA_25
Zot
AAA_34
PhoH
Motif
Other DBs
NCBI-ProteinID:
AGB15035
UniProt:
L0I670
LinkDB
All DBs
Position
417463..419640
Genome browser
AA seq
725 aa
AA seq
DB search
MSDSADYLRFFPYDEPYENQREAMDRIHNSLVRGQDVLFEGACGTGKTLSALVPALSVAR
EQDKTVVITTNVHQQMRQFVADARAIVETEDVRAVVFKGKGAMCHIDVGYEECQTLRDAT
HDLVETEAEYAELERRQEELLERSQDGDGAAAEARAAVMDELDALEGELADLDDRNVCSY
YHNNLTDPDVEARFRSWLFDDVRSPEQIYEYAEQRELCGYELLKDTVEGVDLVVCNYHHL
LDPGIREAFFSWLGRDPEDVIAVFDEAHNLENAAREHASRECSERTFTSAIEELDDSDDP
RAAPARNVLETFRDTLCEMYEGSFEFGAREQVGDNWRDVAIANDDRRDDLTLSFLQSYAG
EGIDDDLEAAASLGRDLDEEYEEAYRNGERETRTECQTLQAARFVRAWMDEGGAAGVYPV
LAVRRDEGTDEIYGRAELYSCLPTGVTGALFDDLSAAVLMSATLQPFDVTEAVLGMDDPV
TMAYGLDFPAANRRTYAVETPALFASERDDSDVQDTVATTIANAVRMTPGNTLAFFPNYG
EADRYADRVAPLVDATVYRDEPGVAVEDIRQEFVADDDGLLCTSLWGTLAEGVSFDGDDA
LSVLVIGVAYPHLDERAEAVQEAYDAAFDGTDTGWRYAVEIPTVRKTRQALGRVLRSPDD
VGVRALLDRRYSRRAKSDLGTYSVNGTFPMETREELLDIEPQKLTFAMRNFYADHDAYDG
DPPAP
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagactcggccgactacctgcgctttttcccgtacgacgagccctacgagaatcag
cgggaggcgatggaccggatccacaactcgctggtccggggccaggacgtgctcttcgag
ggcgcctgcgggacgggcaagacgctctcggcgctcgttccagcgctgtcggtcgcgcgc
gagcaggacaagacggtcgtcatcacgacgaacgtccaccagcagatgcgccagttcgtc
gccgacgctcgcgcgatcgtcgagacagaagatgtccgcgcggtcgtcttcaagggcaag
ggcgcgatgtgtcacatcgacgtcggttacgaggagtgccagacgctccgagacgccact
cacgacctcgtcgagaccgaagcggagtacgccgagctcgaacgccgccaggaggaactc
ttagagcggagccaggatggcgacggagcagccgccgaagcgcgtgcggccgtgatggac
gaactcgacgcgctcgagggtgaactcgcggacctggacgatcgcaacgtctgttcgtac
taccacaacaacctcaccgacccggacgtcgaggcccgatttcgctcctggctgttcgac
gacgtccgttcgccggagcagatctacgagtacgccgagcaacgcgaactctgtggctac
gaactcctgaaggacaccgtcgagggagtggacctcgtggtctgtaactaccaccaccta
ctcgatcccgggatccgcgaggcattcttcagctggctgggtcgcgatcccgaggacgtc
atcgccgtcttcgacgaggcgcacaacctggagaacgccgcccgcgaacacgcgagccgc
gagtgttcggagcgaacgttcacgtccgcgatcgaggaactcgacgacagcgacgatccg
agggcggcacccgcccgaaacgttctcgaaacgttccgcgacacactgtgcgaaatgtac
gagggctccttcgagttcggagcccgagagcaggtgggcgacaactggcgtgacgtcgcc
atcgcgaacgacgaccgccgtgacgacctcaccctctcgttcctccagtcgtacgccggc
gagggtatcgacgacgatctggaggcggccgcctccctcggtcgggacctggacgaggag
tacgaggaggcctaccgcaacggcgagcgcgagacgcgcaccgagtgccagacgctgcag
gcggctcgtttcgtccgcgcctggatggacgagggtggtgccgccggcgtctaccccgtc
ctcgccgtccgtcgagacgaggggaccgacgagatctacggccgtgccgaactctacagc
tgcttgccgacaggcgtgaccggcgcgctcttcgacgacctctcggcggcggtcctcatg
agtgcgaccctccagccgttcgacgtcaccgaagccgttctgggcatggacgatccggtc
acgatggcctacggactggacttccccgcggcaaaccgtcgaacctacgccgtcgagacg
ccggcgctgttcgcgagcgagcgcgacgattccgacgtgcaggacaccgtcgcgacgacg
atcgcgaacgccgtccggatgacgcccggcaacacgctcgccttcttccccaactacggc
gaagcagaccgctacgccgaccgagtggcgccgctcgtcgacgcgaccgtctatcgcgac
gagcccggggtggccgtcgaggacatccggcaggagttcgtcgccgacgacgacggcctg
ctctgtacctcgctgtggggcaccctcgcggagggcgtcagcttcgacggcgacgacgca
ctctccgtcctcgtgatcggcgtcgcgtatccgcacttagacgaacgcgccgaggcggtc
caggaggcctacgacgccgccttcgacgggacggacaccggctggcgctacgccgtcgag
atcccgaccgtccggaagacccgccaggcgctcggtcgcgtcctccgatcgccggacgac
gtcggcgtgcgtgccctcctcgatcggcgctactcgcgtcgggccaagagcgatctgggc
acctacagcgtcaacggtacgttcccgatggagacgcgcgaggaactgctcgacatcgaa
ccgcagaaactcaccttcgcgatgcgcaacttctacgcggaccacgacgcctacgacggc
gacccgcccgcaccgtga
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