Halovivax ruber: Halru_0494
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Entry
Halru_0494 CDS
T02402
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hru
Halovivax ruber
Pathway
hru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halru_0494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hru03019
]
Halru_0494
03016 Transfer RNA biogenesis [BR:
hru03016
]
Halru_0494
Enzymes [BR:
hru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Halru_0494
Messenger RNA biogenesis [BR:
hru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Halru_0494
Transfer RNA biogenesis [BR:
hru03016
]
Prokaryotic type
tRNA degradation factors
Halru_0494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AGB15129
UniProt:
L0I8U2
LinkDB
All DBs
Position
528476..529846
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AA seq
456 aa
AA seq
DB search
MSDDAPVGEETPATDDAEEAPADQAADDAQAEAGTAEGQGPVLIDEELARHLANKRDDLF
EKFEIRDEFPEAVHREAEELTGDVQNDIDEAIDDRRDLRDLTTWTTDPIDAQDFDDAISV
EEREDEYILWVHIADVTHYVHPESAMWAEAVERGNTVYLPGYTIHMLPPILAESVCSLVP
NEERFAHTVEMHLDKEHLGYESIDIYKSVIESDERLTYSQAENRLDDPDAPLHEENALVY
ELADQMHEQRKEDGSLVLNPSRDRAHTIIEECMLKANKAVTHTLMWDRGVEAMYRVHPQP
SPDEWSKALQEIQELDGVSIPGDKWDDPRKAVNATLEEAPGRQLDKIQWAVMKVMPRAKY
MNDPFGGHHALNFEIYGHFTSPIRRLSDLINHWIVYQNDVPENLVALCDRASDKQKDAEQ
CEREYKQFLQEVGLDPMAVNNRGIEVVDAEDAETTI
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgcaccggtcggcgaggagacgccggccacagacgatgccgaggaagcg
cccgccgatcaggcggcggacgacgcccaggccgaagccggcacggccgaggggcagggt
cccgtcctgatcgacgaggagttggcgcgccacctggcaaacaagcgcgacgacctcttc
gagaagttcgagatccgcgacgagttccccgaagcggtccatcgagaggccgaagagctg
actggcgacgtccagaacgacatcgacgaggcgatcgacgaccgtcgggacttacgcgac
ctgacgacgtggacgacggacccgatcgacgcccaggacttcgacgacgccatctccgtc
gaggagcgcgaggacgagtacatcctctgggtgcacatcgcggacgtcacccactacgtc
caccccgagtcggcaatgtgggccgaggccgtcgagcgcgggaacacggtctacctgccg
gggtacaccatccacatgctgccgccgatcctcgcggagtcggtctgctcgctcgttccc
aacgaggagcgcttcgcccacacggtcgagatgcacttggacaaggagcacctcggctac
gagtcgatcgacatctacaagtccgtcatcgagtccgacgagcggctcacctacagtcag
gccgagaaccgactcgacgacccggacgcgccgctgcacgaggagaacgcgctcgtctac
gaactcgccgaccagatgcacgaacagcgcaaggaggacggctcactcgtcctcaacccc
tcgcgcgatcgcgcccacaccatcatcgaggagtgcatgttgaaggccaacaaggccgtc
acgcacacgctcatgtgggaccgcggcgtggaagcgatgtaccgcgttcacccacagccg
agccccgacgagtggtcgaaggcgctccaggagatccaggaactcgacggcgtctcgatc
cccggcgacaagtgggacgacccgcgaaaggccgtcaacgccaccttagaggaggcgccc
ggccgccagctcgacaagatccagtgggccgtgatgaaggtgatgccccgcgcgaagtac
atgaacgaccccttcggcggtcaccacgcgctcaacttcgagatctacggccacttcacc
agtcccatccgccggcttagtgacctgatcaatcactggatcgtctaccagaacgacgtc
ccggagaacctcgtcgcgctctgtgaccgcgccagcgacaaacagaaggacgccgaacag
tgcgagcgcgagtacaaacagttcctccaggaggtcggcctggacccgatggcggtcaac
aaccgcggaatcgaggtcgtggacgcagaagacgcggagacgacgatctaa
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