KEGG   Halovivax ruber: Halru_1767
Entry
Halru_1767        CDS       T02402                                 
Name
(GenBank) AAA family ATPase, CDC48 subfamily
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
hru  Halovivax ruber
Pathway
hru04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:hru00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    Halru_1767
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hru03019]
    Halru_1767
   03009 Ribosome biogenesis [BR:hru03009]
    Halru_1767
   04131 Membrane trafficking [BR:hru04131]
    Halru_1767
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hru04147]
    Halru_1767
Messenger RNA biogenesis [BR:hru03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Halru_1767
Ribosome biogenesis [BR:hru03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    Halru_1767
Membrane trafficking [BR:hru04131]
 SNARE
  SNARE associated proteins
   Others
    Halru_1767
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    Halru_1767
Exosome [BR:hru04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Halru_1767
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N CDC48_2 RuvB_N AAA_16 AAA_2 AAA_14 AAA_5 AAA_33 TIP49 AAA_22 NPHP3_N RNA_helicase nSTAND3 AAA_28 AAA_7 AAA_25 Mg_chelatase AAA_3 Zeta_toxin ABC_tran NB-ARC IstB_IS21 Sigma54_activat ATPase AAA_24 Parvo_NS1 TsaE AAA_11 AAA_17 AAA_18 DUF815 SLFN-g3_helicase AAA_30 PhoH AAA_lid_PRS2_C bpMoxR Bac_DnaA Zot HJURP_C
Other DBs
NCBI-ProteinID: AGB16366
UniProt: L0IDT3
LinkDB
Position
complement(1804545..1806809)
AA seq 754 aa
MKLTVKPLKQKDAGRGLAAIDRASMREIGLENGDYILIQGNGEGRSVARVWPGYPEDEGK
GIIRIDGRLRQEAGVGIDDSIAVEAADVNPATSVTVALPQNLRIRGDIGPLVRDKLSGQA
VTEGQTVPFSFSFGPMAGSGQSVPLKIAETAPSGTVVITDSTSIQISEKPAEQISSRGEG
TEGLPDVTYEDIGGLEGELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLM
AKAVANEIDAHFETISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDEIDSIASKRE
ETSGDVERRVVAQLLSLMDGLEERGRVTVIAATNRVDAIDPALRRGGRFDREIEIGVPDK
EGRTEILQVHTRGMPLVDSIDLDQYAENTHGFVGADLATLAREAAMNALRRIRPELDLEE
EEIDAEVLETLQVKEVDFKEALKGIQPSALREVFVEVPDVTWDDVGGLEATEERLRETIQ
WPLDYPEVYDEMDMQAPKGVLMYGPPGTGKTLLAKAVANESQSNFISIKGPELLNKFVGE
SEKGIREVFEKARSNAPTVIFFDEIDSIAGERGRNSGDSGVSERMVSQLLTELDGLEELE
DVVVIATTNRPDLIDSALLRPGRLDRHIHVPVPDEAARRKIFAVHTEHKPLADAIDLDWL
AAETEGYVGADIEAVTREASMAATREFINSVDPDEMDDTLGNVRISKEHFEHALAEVSPS
VTAETRERYDEIEEQFDSAEPAAAEEDQLGRTFQ
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgaaacttaccgtcaaaccattaaagcagaaggacgccggtcgcggactcgctgcgatc
gatcgcgcgtcgatgcgcgagatcggcctggagaacggcgactacatcctcatccagggc
aacggcgaggggcgatccgtcgcccgcgtctggcccggctaccccgaagacgaagggaag
gggatcatccgtatcgacggccggcttcgccaggaagcgggtgtcgggatcgacgacagc
atcgccgtcgaggcggccgacgtcaacccggcgacgtcggttaccgtcgccctgccgcag
aatctccggatccgcggcgacatcggcccgctcgtccgggacaaactgagcggccaggcg
gtcaccgagggacagaccgtgccgttttcgttctcgttcggccccatggccggttccggc
cagtcggtcccgctgaagatcgccgagacggcgccgtccgggacggtcgtgatcaccgac
tcgacctcgattcagatctcggagaaaccggccgagcagatctcgagtcgcggtgaggga
accgaaggcctccccgacgtgacctacgaggacatcggcggtctcgagggcgaactggat
caggtccgggagatgatcgaactgccgatgcgccaccccgaactgttccagcaactcggc
atcgagccgccgaaaggcgtcctcttacacggaccgccgggcacgggcaagacgctgatg
gcgaaggccgtcgccaacgagatcgacgcccacttcgagacgatctccggtccggagatc
atgtccaagtactacggcgaatccgaagagcaactgcgcgaggtgttcgaggaggccgag
gagaacgcgccggcgatcgtcttcatcgacgagatcgactcgatcgcctcgaagcgtgag
gagacgagtggggacgtcgaacgccgcgtcgtcgcccagctcctctcgctgatggacggc
ctcgaagagcgcggccgggtcaccgtcatcgccgcgacgaaccgcgtcgacgccatcgat
cccgcacttcgacgcggtggccgcttcgaccgcgagatcgagatcggcgtcccggacaag
gaaggccgcaccgagatcttgcaggtccacacgcgtggcatgccgctggtcgattcgatc
gacctcgaccagtacgccgagaacacgcacggtttcgtcggtgccgacctggcgacgctc
gcccgcgaggcggcgatgaacgccctgcgacgtatccggcccgaactcgatctggaggaa
gaggagatcgacgccgaggtcctcgaaacgctccaggtgaaggaagtcgacttcaaggag
gcactcaagggcatccagccctccgccctccgcgaggtgttcgtcgaggtgccggacgtc
acctgggacgacgtcggtggactcgaagcaaccgaagagcggcttcgcgagacgatccag
tggccactcgactaccccgaagtgtacgacgagatggacatgcaggcgccgaagggcgtc
ctcatgtacggcccaccggggaccgggaagaccctgctcgcgaaggccgtcgccaacgaa
tcccagtcgaacttcatctcgatcaagggacccgaactgttgaacaagttcgtcggcgag
tccgagaagggcatccgcgaggtcttcgagaaggcccgctcgaacgccccgaccgtgatc
ttcttcgacgagatcgactcgatcgcgggcgaacgcgggcgcaactccggtgactcgggc
gtctccgagcggatggtcagccagttgctgaccgaactcgacggcctcgaagagctagag
gacgtcgtcgtcatcgcgacgaccaaccggccggacctcatcgactcggcgttgctccgc
cccgggcgactcgaccgccacatccacgtccccgttccggacgaggcggcccgtcggaag
atcttcgcggtccacacggaacacaaaccgctcgccgacgcgatcgatctcgactggctc
gcggccgaaaccgagggctacgtcggtgccgacatcgaggccgtcacgcgagaggcgtcg
atggcggcgactcgcgagttcatcaactcggtcgaccccgacgagatggacgacacgctc
ggaaacgtccgtatctcgaaggaacacttcgaacacgcactcgcggaggtctcgccgagc
gtgaccgccgagactcgagagcgctacgacgagatcgaagagcagttcgactcggccgaa
ccagctgcggcagaagaagatcagctcggtcgaaccttccagtag

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