Halovivax ruber: Halru_1767
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Entry
Halru_1767 CDS
T02402
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hru
Halovivax ruber
Pathway
hru04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Halru_1767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hru03019
]
Halru_1767
03009 Ribosome biogenesis [BR:
hru03009
]
Halru_1767
04131 Membrane trafficking [BR:
hru04131
]
Halru_1767
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hru04147
]
Halru_1767
Messenger RNA biogenesis [BR:
hru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Halru_1767
Ribosome biogenesis [BR:
hru03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Halru_1767
Membrane trafficking [BR:
hru04131
]
SNARE
SNARE associated proteins
Others
Halru_1767
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Halru_1767
Exosome [BR:
hru04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Halru_1767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_14
AAA_5
AAA_33
TIP49
AAA_22
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
AAA_7
AAA_25
Mg_chelatase
AAA_3
Zeta_toxin
ABC_tran
NB-ARC
IstB_IS21
Sigma54_activat
ATPase
AAA_24
Parvo_NS1
TsaE
AAA_11
AAA_17
AAA_18
DUF815
SLFN-g3_helicase
AAA_30
PhoH
AAA_lid_PRS2_C
bpMoxR
Bac_DnaA
Zot
HJURP_C
Motif
Other DBs
NCBI-ProteinID:
AGB16366
UniProt:
L0IDT3
LinkDB
All DBs
Position
complement(1804545..1806809)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRASMREIGLENGDYILIQGNGEGRSVARVWPGYPEDEGK
GIIRIDGRLRQEAGVGIDDSIAVEAADVNPATSVTVALPQNLRIRGDIGPLVRDKLSGQA
VTEGQTVPFSFSFGPMAGSGQSVPLKIAETAPSGTVVITDSTSIQISEKPAEQISSRGEG
TEGLPDVTYEDIGGLEGELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTLM
AKAVANEIDAHFETISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDEIDSIASKRE
ETSGDVERRVVAQLLSLMDGLEERGRVTVIAATNRVDAIDPALRRGGRFDREIEIGVPDK
EGRTEILQVHTRGMPLVDSIDLDQYAENTHGFVGADLATLAREAAMNALRRIRPELDLEE
EEIDAEVLETLQVKEVDFKEALKGIQPSALREVFVEVPDVTWDDVGGLEATEERLRETIQ
WPLDYPEVYDEMDMQAPKGVLMYGPPGTGKTLLAKAVANESQSNFISIKGPELLNKFVGE
SEKGIREVFEKARSNAPTVIFFDEIDSIAGERGRNSGDSGVSERMVSQLLTELDGLEELE
DVVVIATTNRPDLIDSALLRPGRLDRHIHVPVPDEAARRKIFAVHTEHKPLADAIDLDWL
AAETEGYVGADIEAVTREASMAATREFINSVDPDEMDDTLGNVRISKEHFEHALAEVSPS
VTAETRERYDEIEEQFDSAEPAAAEEDQLGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttaccgtcaaaccattaaagcagaaggacgccggtcgcggactcgctgcgatc
gatcgcgcgtcgatgcgcgagatcggcctggagaacggcgactacatcctcatccagggc
aacggcgaggggcgatccgtcgcccgcgtctggcccggctaccccgaagacgaagggaag
gggatcatccgtatcgacggccggcttcgccaggaagcgggtgtcgggatcgacgacagc
atcgccgtcgaggcggccgacgtcaacccggcgacgtcggttaccgtcgccctgccgcag
aatctccggatccgcggcgacatcggcccgctcgtccgggacaaactgagcggccaggcg
gtcaccgagggacagaccgtgccgttttcgttctcgttcggccccatggccggttccggc
cagtcggtcccgctgaagatcgccgagacggcgccgtccgggacggtcgtgatcaccgac
tcgacctcgattcagatctcggagaaaccggccgagcagatctcgagtcgcggtgaggga
accgaaggcctccccgacgtgacctacgaggacatcggcggtctcgagggcgaactggat
caggtccgggagatgatcgaactgccgatgcgccaccccgaactgttccagcaactcggc
atcgagccgccgaaaggcgtcctcttacacggaccgccgggcacgggcaagacgctgatg
gcgaaggccgtcgccaacgagatcgacgcccacttcgagacgatctccggtccggagatc
atgtccaagtactacggcgaatccgaagagcaactgcgcgaggtgttcgaggaggccgag
gagaacgcgccggcgatcgtcttcatcgacgagatcgactcgatcgcctcgaagcgtgag
gagacgagtggggacgtcgaacgccgcgtcgtcgcccagctcctctcgctgatggacggc
ctcgaagagcgcggccgggtcaccgtcatcgccgcgacgaaccgcgtcgacgccatcgat
cccgcacttcgacgcggtggccgcttcgaccgcgagatcgagatcggcgtcccggacaag
gaaggccgcaccgagatcttgcaggtccacacgcgtggcatgccgctggtcgattcgatc
gacctcgaccagtacgccgagaacacgcacggtttcgtcggtgccgacctggcgacgctc
gcccgcgaggcggcgatgaacgccctgcgacgtatccggcccgaactcgatctggaggaa
gaggagatcgacgccgaggtcctcgaaacgctccaggtgaaggaagtcgacttcaaggag
gcactcaagggcatccagccctccgccctccgcgaggtgttcgtcgaggtgccggacgtc
acctgggacgacgtcggtggactcgaagcaaccgaagagcggcttcgcgagacgatccag
tggccactcgactaccccgaagtgtacgacgagatggacatgcaggcgccgaagggcgtc
ctcatgtacggcccaccggggaccgggaagaccctgctcgcgaaggccgtcgccaacgaa
tcccagtcgaacttcatctcgatcaagggacccgaactgttgaacaagttcgtcggcgag
tccgagaagggcatccgcgaggtcttcgagaaggcccgctcgaacgccccgaccgtgatc
ttcttcgacgagatcgactcgatcgcgggcgaacgcgggcgcaactccggtgactcgggc
gtctccgagcggatggtcagccagttgctgaccgaactcgacggcctcgaagagctagag
gacgtcgtcgtcatcgcgacgaccaaccggccggacctcatcgactcggcgttgctccgc
cccgggcgactcgaccgccacatccacgtccccgttccggacgaggcggcccgtcggaag
atcttcgcggtccacacggaacacaaaccgctcgccgacgcgatcgatctcgactggctc
gcggccgaaaccgagggctacgtcggtgccgacatcgaggccgtcacgcgagaggcgtcg
atggcggcgactcgcgagttcatcaactcggtcgaccccgacgagatggacgacacgctc
ggaaacgtccgtatctcgaaggaacacttcgaacacgcactcgcggaggtctcgccgagc
gtgaccgccgagactcgagagcgctacgacgagatcgaagagcagttcgactcggccgaa
ccagctgcggcagaagaagatcagctcggtcgaaccttccagtag
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integrated database retrieval system