Halovivax ruber: Halru_3088
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Entry
Halru_3088 CDS
T02402
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hru
Halovivax ruber
Pathway
hru03410
Base excision repair
hru03430
Mismatch repair
hru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Halru_3088
03430 Mismatch repair
Halru_3088
03440 Homologous recombination
Halru_3088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hru03400
]
Halru_3088
DNA repair and recombination proteins [BR:
hru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Halru_3088
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Halru_3088
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Halru_3088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AGB17654
UniProt:
L0IFW1
LinkDB
All DBs
Position
3118106..3119629
Genome browser
AA seq
507 aa
AA seq
DB search
MAGPVPELEDRAAACAERLHEADRVLLASHIDADGLTSAAVASSALERASVPFEVVFEKQ
LDEDAIARIARTDYETVWFTDFGSGQLDIITDYAADGGFTPVIADHHQPADADTEFHCNP
LLEGLDGASELSGAGTAYLLARELAGYGPTESAGANERKSGPNPPTDPTMTDGGTVATTT
RADNRDLAALAVVGAVGDMQASGGELHGANAEIVADGVEAGVLEPTTDLALYGTQTRPLP
KLLEYATDVRIPGISNDQRGAMRFLDGLDLELRDDAGEWRRWGYLTADEQQTVASALVKH
AISRGVPAGKIDGLVGTSYQLTAETTGTELRDASEFSTLLNATARYDRADVGLAVCLGDR
GGALERARELLRSHRRNLSEGIDLVTTEGVTNEGHVQWFHAGDRIRETIVGIVAGMALGN
EGIDRDRPIFAFAEKSDEPDAVKVSGRGTHTLVRQGLDLSVVLGEAARHVGGDGGGHDVA
AGATVPAGREPDFLQRADELVGEQLGQ
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaccggtccctgagctcgaagatcgcgcggccgcgtgcgcggagcgactccac
gaggccgaccgcgtcctgctcgcatcgcacatcgacgccgacggcctcaccagcgccgcg
gtcgcttcgagtgcgctcgaacgtgcgagcgtgccgttcgaagtcgtcttcgagaagcaa
ctcgacgaggacgcgatcgcacgcatcgcccggaccgactacgagacggtctggttcacc
gacttcggcagcgggcagttagacatcatcaccgactacgccgccgacggcggattcacg
cccgtgatcgcggaccaccaccagcccgccgacgccgacaccgagttccactgtaacccg
ctcctcgaaggactcgacggcgcgagcgagttgtcgggagccggcacggcgtacctcctc
gcccgcgaactggccggctacggcccgaccgaatcggctggggcgaacgagcgcaaatcg
gggccgaacccacccaccgaccccacgatgacggacggtggcaccgtcgcgaccacgaca
cgggcggacaaccgcgacctggccgccctcgccgtcgtcggtgccgtcggcgacatgcag
gcctccggtggcgaactccacggcgcgaacgccgagatcgtggccgacggcgtcgaagcc
ggggtcctggaaccgacgacggacctcgccctctacggcacgcagacgcggccgctcccg
aagttactcgagtacgcgaccgacgtgcgcattcccggcatctcgaacgatcagcgcgga
gccatgcgctttctcgacggactcgacctcgaactgcgagacgatgcgggcgagtggcgc
cggtggggctatctcactgctgacgaacagcagactgtcgccagcgcactcgtcaaacac
gctatctcccgcggcgtccccgccggcaagatcgatggcctcgtcgggacgagttaccag
ctcacggccgaaacgacgggaacggagcttcgcgacgccagcgagttctcgacgctcctc
aacgcgaccgcgcggtacgaccgcgccgacgtcgggctcgccgtctgtctcggcgaccgc
ggcggtgcgctcgaacgcgcccgcgagttactccgttcacaccgccgaaacctctcggag
ggaatcgacctcgtgaccacggagggcgtcaccaacgaagggcacgtccagtggttccac
gccggtgaccgcatccgggagacgatcgtcggcatcgtcgccggcatggcgctcgggaac
gagggcatcgatcgcgatcgaccgatcttcgcgttcgccgagaagagcgacgaacccgac
gccgtcaaggtctccggtcgcggcacccacacactcgtccgccagggtctggatctctcc
gtcgtcctcggcgaggccgcccgccacgtgggtggcgacggcggtggacacgacgtcgcg
gccggcgcaaccgtcccagcgggacgcgaacccgactttctccagcgagccgacgagctc
gtcggcgaacaactcggccagtaa
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