Halorubrum salinarum: HPS36_03085
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Entry
HPS36_03085 CDS
T07841
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hsai
Halorubrum salinarum
Pathway
hsai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPS36_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsai03021
]
HPS36_03085
Transcription machinery [BR:
hsai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HPS36_03085
Prokaryotic type
Archaeal type
TFB
HPS36_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_RPB9
Zn_ribbon_LysW
HTH_Tnp_ISL3
Anti-TRAP
DUF8106
Cas12f1-like_TNB
DUF7129
DZR
Zn_ribbon_tTFIIB
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QKG91881
UniProt:
A0A7D4CJA6
LinkDB
All DBs
Position
587955..588929
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AA seq
324 aa
AA seq
DB search
MSERLHTRGSRSRTETNEEESESTDETLSCPECGGHVINDEEHGETVCSDCGLVVEADSV
DRGPEWRAFDSREKDEKSRVGAPTTNTMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRL
RKWNERFRTRDSKERNLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIE
GVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQYVPR
FASDLELSEESEMRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEV
ADISEVTIRNRYHELLEAEDGLVA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacgactacacacacgggggagtcgctcccgaacggagacgaacgaggaggaa
tcggagagcaccgacgagacgctgagctgcccggagtgcggcggccacgtcatcaacgac
gaggagcacggcgagacggtctgtagcgactgcggcctcgtcgtcgaggcggactcggtc
gaccgcggcccggagtggcgcgcgttcgactcccgcgagaaggacgagaagagccgcgtc
ggcgccccgaccacgaacacgatgcacgacaaggggctctcgacgaacatcgactggcgc
gacaaggacgcgtacggccgctcgctcggcgcgcgccagcggcagaagatgcagcggctc
cgcaagtggaacgagcggttccgtacccgcgactcgaaagagcgcaacctgaagcaggcg
ctcggcgagatcgaccgcatggcctcggcgcagggcctcccggacaacgtccgcgagacg
gcctccgtcatctaccgccgcgcgctcgacgaggacctcctccccggccgctccatcgag
ggcgtctccacctcctgcgtgtacgccgccgcccggatggcgggcgtcccgcgctcgctc
gacgagatcgccgacgtgtcgcgcgtcgagaaggccgagatcgcccggacgtaccggtac
gtcgtccgcgagctcaagctcgaagtgaagccggccgaccccgagcagtacgtgccccgg
ttcgcctccgacctggagctctccgaggagtccgagatgcgcgcgaagagcctcctgcgc
aacgccaaggagaagggcgtccactcgggcaagtcgccggtcggcctcgccgcggccgcc
gtctacgccgccgcgctgctcacgaacgagaagacgacgcaggccgcggtctcggaggtc
gccgacatctccgaggtcaccatccggaaccgctaccacgagctgctggaggccgaggac
ggcctcgtcgcgtaa
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