Haloterrigena salifodinae: JMJ58_16020
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Entry
JMJ58_16020 CDS
T07070
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsal
Haloterrigena salifodinae
Brite
KEGG Orthology (KO) [BR:
hsal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsal03016
]
JMJ58_16020
Enzymes [BR:
hsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JMJ58_16020
Transfer RNA biogenesis [BR:
hsal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JMJ58_16020
Prokaryotic type
tRNA splicing ligases
JMJ58_16020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRV14431
UniProt:
A0A8T8DZ06
LinkDB
All DBs
Position
3240685..3242145
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AA seq
486 aa
AA seq
DB search
MTTFDANGITLEKVREYVWEIPQEGDMRAPARVLASEALLEEIKEDKTLEQITNTTHLPG
ITNYAICMPDGHQGYGFPVGGVGALDAETGCISPGAVGYDINCGVRMMRTNLTYDELQGR
EEELVDSLFTNVPSGLGGGGIVEAGVDTVEEILERGVDWALEHGHAVEEDLLHCEDEGMR
EGADADKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDEVGAAYGLEEDQIVVLIHC
GSRGLGHQTCNDYLRKIEKQHQGLLNQLPDKELAAAPAGSQLAEDYYAAMNAAINFAWVN
RQLIMHRTRQVFERVFGRSWEEMDMHLLYDVAHNIAKKESHEVDGEQRDLYVHRKGATRA
FPAGHPEVPTAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAK
SEYWGGDVQQELEEQDQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgttcgacgccaacggcatcacgctcgagaaagtgcgtgagtacgtctgggag
atcccgcaggagggcgacatgcgcgcgccagcgcgggtactcgccagcgaagcgctgctc
gaggagatcaaggaggacaaaaccctcgaacagatcacgaacacgacccacctccccggc
atcacgaactacgcgatctgtatgcccgacggccaccagggctacggctttccggtcggc
ggagtgggtgcactcgacgctgaaaccggctgtatctcgccgggggcagtcggatacgac
atcaactgcggcgtccggatgatgcggacgaacctgacctacgacgagctacagggccgc
gaggaggaactcgtcgactcgctgtttaccaacgttccgtcggggctgggcggcggcggc
atcgtcgaggccggcgtcgacaccgtcgaggagatcctcgagcgcggcgtcgactgggcg
ctcgagcacggccacgccgtcgaggaggacctgctgcactgcgaggacgaggggatgcgc
gagggtgccgacgccgacaaggtcagccagaaagcgaaagaccgcgggaagaaccagatc
ggctcgctgggctcgggcaaccacttcctcgaggtccagcgcgtcacggacgtcttcgac
gacgaggtgggcgcggcctacggcctcgaagaggaccagatcgtcgtcctgatccactgc
ggctcccgcgggctgggccaccagacgtgtaacgactacctgcgcaagatcgagaagcaa
caccaggggctgttgaaccagctgccggacaaggagctggccgcggcacctgcgggctcg
caactcgccgaggactactacgcggcgatgaacgcggcgatcaacttcgcgtgggtcaac
cgtcagctgatcatgcaccgcacgcggcaggtcttcgagcgcgtcttcgggcgctcgtgg
gaggagatggacatgcacctgctgtacgacgtggcgcacaacatcgcgaagaaggagtct
cacgaagttgacggcgaacagcgcgacctctacgtccaccgcaagggcgccacgcgggcg
ttccccgcgggccaccccgaagtcccgacggcctaccgcgacgtcggccagccggtcatc
atccccggcagcatgggcgcggggagctacgtccttcgcggcggcgagaactccatggac
ctcaccttcggctcgacggcccacggcgcgggccggctgatgagccgtacccaggccaaa
agcgagtactggggcggcgacgtccagcaggaactcgaggaacaggaccagatctacgtc
aaggcccagtcgggcgcgacggtcgccgaggaggccccgggcgtctacaaggacgtcgac
gaggtcgtccgcgtctcagacgaactcggcatcggcgacaaggttgcgcggacgttcccc
gtgtgtaacatcaaggggtga
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