Hymenobacter sublimis: MWH26_10680
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Entry
MWH26_10680 CDS
T09379
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsb
Hymenobacter sublimis
Brite
KEGG Orthology (KO) [BR:
hsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsb03016
]
MWH26_10680
Enzymes [BR:
hsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MWH26_10680
Transfer RNA biogenesis [BR:
hsb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MWH26_10680
Prokaryotic type
tRNA splicing ligases
MWH26_10680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UPL47663
UniProt:
A0ABY4J499
LinkDB
All DBs
Position
2563466..2564896
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AA seq
476 aa
AA seq
DB search
MATQKLRGNDLRKIGYPEGRATTLALDILEDRQLKNLDKGSALALLQKIKADPYAYLRDS
LWRELAKEFVPDPSRDVSLSPDVKDYRRYGEAFIEDGARKQMDTAMKLPVTLDGALMPDA
HQGYGLPIGGVLAVDNAVIPYGVGMDIGCRMALSVFPLPPRYLDQRTQELKKLLHNHTRF
GAKEVFKNPTHDPILDRPEFREIPVVKGKREAAINQLGSSGSGNHFVEWGVVDITSEDNE
LGVPIGQYLGLLSHSGSRGLGAAIAQHYTKVAMQKCPLPPEARYLAWLDLDSQEGQEYWR
AMNLAGDYASACHHDIHRRLSLALGEKPLAKVENHHNFAWKETLPDGREAIVHRKGATPA
GQGVLGVIPGSMTAPGFIVRGRGERDSIQSASHGAGRRLSRTQAKQQVTEGELRRLLRDQ
GIELIGGGLDEAPQAYKDIHQVMAHQQDLVDVLGSFRPRIVRMDAGGGGKSKYGGE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcaaaagctgcgcggcaacgacctgcgcaaaattggctaccccgaaggccgg
gccaccactctggccctggatattctggaagaccgccagctcaagaatctcgacaaaggc
agcgccctggctctgctccaaaaaataaaggccgacccctacgcctacctccgcgactcg
ctgtggcgggagctggccaaggagtttgtgcctgaccccagccgcgacgtcagcctcagc
cccgacgtgaaagactaccgccgctacggcgaggcctttattgaagacggcgcccgcaag
cagatggacaccgccatgaagctgcccgtaaccctggacggggccctcatgcccgatgcc
caccagggctacggcctgcccattggcggggtgctggccgtggataacgccgtgattccc
tacggcgtgggcatggacattggctgccgcatggccctgtcggtgtttcccctcccgccg
cgctacctggaccagcgcacccaggagttgaaaaagctgctgcacaaccacacccgtttc
ggggccaaggaagtgttcaagaaccccacccacgaccccattctggaccggccggagttc
cgggaaattccggtggtcaagggcaagcgcgaggcggccatcaaccagctcggttcctcg
ggctcgggcaaccacttcgtggagtggggcgtggtggatattacctcggaagacaacgag
ttgggcgtacccatcgggcagtatttggggctactctcacacagcggctcccgggggctg
ggtgcggccattgcccagcactacaccaaggtagccatgcagaagtgtcccctccccccg
gaagcgcgctacctagcctggctcgacctagactcgcaggagggccaggagtactggcgg
gccatgaacctggccggcgactatgcctcggcctgccaccacgacattcaccgccgcctc
agcctagctttgggcgagaagcccctggccaaagtggaaaaccaccacaacttcgcctgg
aaggaaaccctgcccgacgggcgcgaggccattgtgcaccgcaagggggctacccccgcc
ggccagggcgtactcggggtgattccgggctcgatgacggcccccggctttatcgtgcgc
ggccgcggcgagcgggactccattcagtcggcctcgcacggggcggggcggcgcctttcg
cgtacccaggccaagcagcaggtcacggaaggtgagctgcgccgcctgctgcgcgaccag
ggcattgagctgattgggggcggcctcgacgaagcgccccaagcctacaaggacattcac
caggtaatggcccaccagcaggacctagtggatgtgctgggctccttccgcccgcgcatt
gtgcgcatggatgccggcggcgggggcaaaagcaagtacggcggcgagtaa
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