Acetivibrio saccincola: HVS_00550
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Entry
HVS_00550 CDS
T05223
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HVS_00550 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsc03400
]
HVS_00550 (mfd)
Enzymes [BR:
hsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HVS_00550 (mfd)
DNA repair and recombination proteins [BR:
hsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HVS_00550 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AUG56090
UniProt:
A0A2K9EKY8
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All DBs
Position
101398..104910
Genome browser
AA seq
1170 aa
AA seq
DB search
MRNTKTKKYLIDPLLEMNRYHDILNDIKKGDGSVSLGGSSQSQKAHMSYAILKHLNLKGV
FIANNDISARKTYEDFLNFFEEGVLYFPPEEIMFHDIEAKSRDSSYERIRALHKILNGEY
EIVITSPEAIGRKLIDKELFLKSIISFTVGETVDLTEISKNLVVIGYERVSVVEGEGQFA
IRGGIVDIFPINSENAVRIEFFDDEIDSIRTFDVISQRSLERIEEIAILPARELIYDDKR
RDEILDKISNSLNEYLKKLSKKDVEGFKEKIEEKIKGDMERFKEEYYFPGMDRYISYIID
KPSIITHYMDLEKTLFFLDEPKKFETRYESLLFENYELCKAFLEKGYLLPESFEIYVSLE
YILENINKNKPVYFDILETEERVPSKLLNSYKGHFDILIDDIRKWKENKYRILVMSGGQS
RGRILEENLKKEGIEANYYDEFSGEILPGQVVITGGSLQTGFEYQDIKFVIISGKDFFGE
KKKKKRTFSKKNKGQKISVFTDLNINDYVVHQIYGIGKYVGIQQLEVEGIKKDYLKIRYY
DGDFLYVPTNQLDLIQKYIGSEGKTPKLSKLGGNDWAKTKAKAKESLMELAEDLIKLYAK
RETSKGYKYSEDTVWQKQFEDLFPYQETEDQLKCIEEIKKDMESDKPMDRLLCGDVGYGK
TEVAIRAIFKAVMDGKQVAYLVPTTVLAQQQFENFKDRMKDFPVRVEVISRFKSKSDQKK
IIKDTKAGIVDILIGTHRLLQKDIAFKDLGLLVIDEEQRFGVRHKERIKKMKSNVDVLTL
TATPIPRTLHMSLMGIRDISIIEDPPEERYPVQTYVMEYNPEVIKEAINRELARGGQVFY
LFNRVRSINVKAAQIKDLVPDARVAVAHGQMKETDLENIMLQFVEGEYDVLVCTTIIESG
LDMPNVNTIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIK
EFTEFGSGFKIAMRDLQIRGAGNLLGAQQHGNIDLVGYDMYVRLLSEAINELRGTAPEEE
EVEISVDLKVSAYIDDSYIGDENQKIEMYKKIASIQDEKDMLDIRDELIDRYGEIPDAVE
SLIQIAHLKVLAKKCGFSSIQEKGENVILQFMENKHVDINIISKLTEKHRRRILFTASNK
SYITFIVKDTPRKNLLKDIKILLQEIIELQ
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatacaaaaacaaaaaaatatttaattgatccgcttttggaaatgaatcggtac
catgatattttaaatgatataaaaaagggtgatggttcagtttctttaggtggatcatcc
caatcccaaaaagcccatatgagttatgctattttaaagcatttaaacttaaaaggtgta
ttcattgccaataatgatattagtgcaagaaagacctatgaggattttttaaactttttt
gaagagggtgttttatattttccaccggaagaaattatgtttcacgatatagaggcaaaa
agccgtgattcctcttatgagagaataagggctttgcacaaaatcctaaacggtgaatat
gaaatagtaattacaagtcctgaggctataggaagaaagcttatagataaggaattgttt
ttaaaaagcatcatctcctttactgtgggagagactgtggatttgactgaaatttcaaaa
aaccttgtagtaattggctatgaaagggtgtcggtggtagaaggggaaggacagtttgcc
ataaggggcgggatagttgatatatttccaataaacagtgaaaatgccgtaagaattgaa
ttttttgatgatgaaatagattctataaggacttttgatgttatatcccaaaggtctttg
gaaagaatagaagaaatcgccattttacccgccagggaactgatatatgatgacaaaaga
agggatgagattttagataaaatatccaatagtcttaatgagtacttaaaaaaattaagt
aaaaaagatgtagaaggctttaaagaaaagatagaagaaaaaataaaaggtgatatggaa
agatttaaagaagagtactattttccaggaatggacagatatatatcctacattattgat
aagccttcaattattacacattatatggatttggaaaaaacattgttttttttagacgaa
ccaaaaaaatttgaaacaaggtatgaaagtcttctttttgaaaactatgagctttgcaag
gcatttcttgaaaaggggtatttactgccggaaagttttgagatttatgttagcttagag
tatatattagaaaatatcaataaaaacaagccggtgtattttgatattttggaaacagag
gagagagtaccttctaagcttttaaactcctacaaaggacattttgatattttaatagat
gatataagaaaatggaaagaaaacaaatacagaattctggtgatgtcaggagggcaaagc
agagggcgtatattagaagaaaatttaaaaaaagaaggaatagaggcaaattattatgat
gaattttcaggtgaaattttgccgggacaggtggttataacagggggaagccttcaaacg
ggctttgagtaccaggacataaaatttgtaattataagcggaaaggatttttttggagaa
aagaaaaagaaaaagagaacttttagtaaaaaaaataagggtcagaaaataagcgtattt
acagaccttaatataaatgactatgttgtccaccagatttatggaataggaaaatatgta
ggtattcaacagctggaagtggagggtataaaaaaggactatttaaaaatccggtattat
gacggggactttttgtatgtgcctacaaaccagctggatttaattcaaaaatacataggt
tcggagggaaagacgccaaaacttagcaaactaggggggaatgactgggcaaaaacaaag
gcaaaggcaaaagagtctttgatggaattggcagaagaccttattaagctgtatgccaag
agggaaacttcaaagggatataaatacagtgaagatacagtgtggcagaaacagtttgaa
gatttattcccgtatcaggagacagaagaccagttaaaatgcattgaagaaattaaaaaa
gacatggaatctgacaaaccaatggataggcttttgtgcggggatgtgggctatggaaag
actgaggttgccataagagccatatttaaagcggtgatggacggaaagcaggtggcgtat
ctggttcccaccaccgttttggcacagcagcagtttgaaaattttaaagataggatgaag
gactttcctgtaagggtggaggttataagccggtttaaatccaaaagcgaccagaaaaaa
attataaaagatacaaaggcaggaattgtggatatacttataggaacccacaggcttctt
caaaaggacattgcatttaaggatttagggcttttagtgatagatgaggagcagcgtttt
ggtgtaaggcacaaggaacgcatcaaaaaaatgaaatccaatgtggatgtacttaccctt
actgctacccctattccaagaaccctgcacatgtcccttatgggaatacgggatataagc
attattgaagatccccctgaagaaaggtatccggtgcagacatatgtaatggagtacaat
cctgaagtgataaaggaggcaattaacagggagcttgccagaggaggacaggttttttac
ctgtttaacagggtaagatccatcaatgtaaaagctgctcagataaaagacctggtgccg
gatgcaagggtggcggtggctcatgggcaaatgaaagaaacagatttggaaaacataatg
ctgcaatttgtagaaggtgagtatgatgtactggtttgtacaacaataattgaatcaggt
cttgacatgccaaatgtaaataccattatagtggaagacgcggacaaaatgggacttgcc
cagctataccagctaaggggcagggttggaaggtccaacaggcttgcctatgcctatata
acatacaaaaaagataaagtgctttctgaagtggcggaaaaaaggcttcaggcaataaag
gagtttactgaatttggttccggatttaaaatagccatgagggatttgcaaataaggggg
gcaggtaatttactgggagcccagcagcatgggaatatagacctggtaggatatgatatg
tatgtaaggcttctttcagaagctataaatgaattaaggggtacggcgcctgaagaggaa
gaagtggagatttctgtagacctgaaagtgagtgcctatatagatgacagttatataggc
gatgaaaatcaaaaaattgaaatgtataaaaagatagcgtcaatacaagatgaaaaagat
atgctggatataagggatgagttaattgacagatatggggaaataccggatgctgtagaa
tcacttatacaaattgcccatttaaaagtactggcaaaaaaatgcgggttttcatctatt
caagaaaaaggagaaaatgtaatactgcagttcatggagaacaaacatgtagacattaac
ataattagtaagttaacggaaaaacacagaaggaggatactttttactgccagcaataaa
tcatatataacatttatagtcaaagacactcctaggaaaaatcttctaaaagatattaag
attttgttacaagaaattattgaattgcagtag
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