Acetivibrio saccincola: HVS_01265
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Entry
HVS_01265 CDS
T05223
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HVS_01265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsc03021
]
HVS_01265
03019 Messenger RNA biogenesis [BR:
hsc03019
]
HVS_01265
Transcription machinery [BR:
hsc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HVS_01265
Messenger RNA biogenesis [BR:
hsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HVS_01265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
AUG56221
UniProt:
A0A2K9EI75
LinkDB
All DBs
Position
246171..248066
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AA seq
631 aa
AA seq
DB search
MEGINLKDKTLEDLRYIAKMLGLKSISRLRKSELIERIYQSQGIENVEETMKSGDTETKT
EKSDIDTEKEKKSKKKDEETKDVKELKEETKKEETKKEGAKKEETKETKETKEAKEESKE
EVPVLRKSKRGRPKTVKVSEEPKKEVKEEVKGEEAKEEVKEKEENKEVAEDKKKEEKEKE
AKQEAKKEVKEEAEQETKQETKLEAKEETTLEAKQESKQETKQETGEITSKQESKQEKKT
EGKKETESSSYPNGLEKIESDDPVEGVLEVLPDGYGFLRSDNYLSGPKDVYVSPSQIRRF
NLKTGDKIRGKGRIPKEGEKFQALLYVQTVNGDPPEVAAKRVPFEYLTPIYPDSRITLET
TPRELSTRLIDLIAPVGKGQRGMIVSPPKAGKTVLLKKVANAITNNYPDMELIVLLIDER
PEEVTDMQRSIKGEVIYSTFDEVPEHHIKVAEMVLERAQRLVEQKKDVVILLDSITRLAR
AYNLTIPPTGRTLSGGLDPGALHKPKRFFGAARNIENGGSLTIIATALIETGSRMDDVIF
EEFKGTGNMELHLDRKLSEKRIFPAIDINKSGTRREELLLSQKELEGVWAIRKAMSNMGT
AEVTEILINRLVQTKNNEEFISSLNLAFLDK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggagggtattaatctaaaagataagacgcttgaagatctacggtacattgcaaagatg
ctgggattaaaaagcattagcagattgagaaagagtgagcttatagaaagaatttatcag
tcccaagggattgaaaatgttgaagaaaccatgaagtcaggcgatacagaaactaagacc
gaaaaatcagatatcgatacagaaaaagaaaagaaatccaaaaagaaagatgaagagact
aaagatgttaaggaattaaaagaagaaacaaagaaagaagaaacaaagaaagaaggagca
aaaaaagaagaaactaaagagacaaaggaaactaaagaagccaaagaagagtcaaaagaa
gaagttcctgtgttgagaaaatccaagagggggagacctaaaacagtcaaagtttctgag
gaaccaaaaaaagaggtaaaagaagaggttaaaggggaggaagctaaagaagaagttaaa
gaaaaagaagaaaataaagaagttgcagaagacaagaagaaagaagagaaagaaaaggaa
gctaagcaagaggctaaaaaggaagtcaaagaagaagctgaacaggaaactaagcaagag
actaaactagaggctaaagaagaaacaacactagaagctaaacaggaaagcaagcaagag
actaaacaggagaccggtgaaatcacttctaagcaggaaagtaagcaggaaaagaaaaca
gagggtaagaaagagacagaaagctccagttatcctaacggactggaaaagatagaaagt
gatgatcctgttgagggagtactagaagttttaccagatggttatggatttttaagaagc
gataattatctgtcaggacctaaagatgtttatgtttcaccatcacaaatcagacgtttt
aatttgaaaaccggtgataagataaggggaaagggcaggataccaaaagagggggagaaa
ttccaagccttattatatgttcaaacggttaatggggaccctcctgaggtagcagctaaa
agagtaccttttgagtatctgacacctatatatccggatagcaggattacccttgaaaca
actccaagagaattgtcaaccagattaattgatttaattgcgccggtaggtaagggacag
cgtggtatgattgtctcacctccaaaagcgggtaagacggtattgcttaaaaaagtggca
aatgccattacaaataattaccctgatatggagcttattgtgctgcttattgatgaaaga
cctgaggaagtaacagatatgcagcgttctataaagggtgaggttatttattctacattt
gacgaagttcctgaacatcatataaaagttgcagaaatggttttagaaagagctcaaagg
cttgttgaacaaaagaaagacgttgtaatattgttagatagtattaccaggcttgcaagg
gcatacaaccttacaataccgccgacaggaaggactctttccggtgggcttgatccaggt
gcactgcacaagccaaaaagattttttggtgctgccaggaatatagaaaacggcggaagt
cttacaataatagctactgcccttatagaaaccggaagcaggatggatgatgttatattt
gaagaatttaagggtacaggtaatatggaacttcacttagatagaaaactgtctgagaag
agaatattccctgcaatagatataaataaatcaggtacaagaagagaagaattgctgctt
agccagaaagaacttgagggagtgtgggctataagaaaggctatgagcaatatggggact
gctgaagtgacagagatattaattaaccggctggtacaaacgaaaaataatgaggagttt
attagcagccttaatttagcatttctagataaatag
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