Acetivibrio saccincola: HVS_03285
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Entry
HVS_03285 CDS
T05223
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03420
Nucleotide excision repair
hsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HVS_03285 (yjcD)
03430 Mismatch repair
HVS_03285 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsc03400
]
HVS_03285 (yjcD)
Enzymes [BR:
hsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HVS_03285 (yjcD)
DNA repair and recombination proteins [BR:
hsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HVS_03285 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
HVS_03285 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
ResIII
AAA_11
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AUG56605
UniProt:
A0A2K9EBM3
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All DBs
Position
710571..712685
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AA seq
704 aa
AA seq
DB search
MGFFGVLEKNYKINLNNQQKEAVTHTRGPALVLAGPGSGKTTVIVSRTAYLILELKIKPE
NILTLTFNRAAKIEMEKRFNRVFSDLISGKKVHFSTFHSFCNLVVKDYEKMQGKYLSRIE
GNEESKNNKRLILKEIYENINGSRINDDQLENLINDIGIIKNKMIKNIQEFETNIKNFSR
IYNSYEEYKKANLLMDFDDMLTFAYVILKKFPSILKKYTGRYTFIQVDEGQDLSKIQFEI
LKLLTGPGDLAGFKEKNIFIVADDDQSIYGFRGAEPEYILNVEKQFGGCSFYYLNNNYRS
TANIVHVSSNFIKNNTRRYEKKHSTCNEYKYDPFIIEARDQTAQYNFIVDKVNEHLSKKR
DSTIALLYRNNISSIPLAEALDRNGIAFNVKQNKLFFFNHWAVQDILAFLKFSLDQTDID
SFSRIYYKMNRYISKAMLEYALKAGYKNSVIDGILKDSDLETYRKMTLLNVKSEFKKLSK
KKPFDALNYIEKNFNYFGYVKEYCDGTGLFYDYIYSLFGVLKVMALKCKKITDYLERIEE
VKELLENPSSESRVTISTIHSSKGLEYDCVMMLDMLNTELPGESAIDLAREENKAELLEE
ERRLFYVGITRAKEYLYLIYPNFRNGFKEERTIFIDEVLECMRVKTLNDIAEGMIVNHKH
FGKGVIAAILEENKDKVIVEIDFNGVRRKFDLIMCLEKGILKIY
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgggtttttttggggtattagaaaaaaactacaaaataaatcttaacaatcaacaaaaa
gaagcagtaacacataccagaggaccagccctagtgttggctggtccgggatctggaaaa
accactgtaattgtttcaaggactgcttatcttatactagagcttaaaataaagccggaa
aacattctcaccttgacatttaacagggctgcaaaaatcgaaatggaaaaaaggtttaat
agagtattcagtgatttaatttcaggcaaaaaagttcatttttcaacttttcatagcttt
tgcaatttagtggtaaaagattatgaaaagatgcagggaaagtatttgtccagaattgaa
ggcaatgaggagtcaaaaaataataaaaggctgattttaaaagaaatatatgaaaatata
aacggcagtcggataaatgacgaccaacttgaaaatctcataaatgacattggcattata
aaaaataaaatgataaaaaatattcaagaatttgaaacaaatattaagaatttttcccgt
atatataatagttacgaagaatataagaaggcaaatttactgatggattttgacgacatg
cttacatttgcctatgtcattttaaaaaagttccctagtattttaaaaaagtataccgga
aggtatacttttattcaagtagatgaaggacaggacctttcaaagattcagtttgaaatt
ttgaagcttttaacaggtcctggggatttggcgggttttaaggaaaagaatatttttata
gttgcagatgatgaccagtccatatatgggttcaggggggcagaaccggaatatatactt
aatgtggaaaagcagtttggcggatgttccttctattatcttaacaacaactaccgttct
acagctaatatagtacatgtaagcagtaattttataaaaaacaataccagaaggtatgag
aaaaaacacagtacttgtaatgaatataagtatgacccttttattatagaggcaagggat
cagactgcccagtataattttattgtggacaaggtaaatgaacatttgagtaaaaaaaga
gattctaccattgcccttctttacagaaataatatttcttctattccgctggcagaagcc
cttgacagaaacggaatagcttttaatgtaaagcaaaacaaattgtttttctttaaccac
tgggctgtacaggatattttagcttttttaaaattttcactggatcaaacagacatagat
tctttttcaagaatatactacaaaatgaacaggtatatttcaaaagcaatgttagaatat
gctctgaaggctggttataaaaattcagttatagacgggattttaaaggatagtgattta
gagacatacagaaaaatgacccttttaaatgtcaaaagtgagtttaaaaagctgtctaag
aaaaagccttttgatgctttaaactacattgaaaaaaactttaactattttggctatgta
aaagaatactgtgacggaacaggtcttttttatgattatatatacagcctttttggggtt
ttgaaagtaatggctttaaaatgcaaaaaaattactgattatttggaaaggattgaggaa
gtaaaggaacttttagaaaatccgtcatcggaatccagagtgaccatatccactatacac
tcaagcaaaggattggagtatgactgcgttatgatgctggatatgctaaacaccgagctg
ccgggtgaaagtgctattgaccttgcaagagaggaaaataaagcagagcttcttgaagag
gaaagaaggctgttttatgttggaattacaagggcaaaggagtatctgtatttaatatat
ccaaatttcaggaatggatttaaggaagaaaggacaatttttatagatgaagtattggaa
tgtatgagagtgaagactttaaatgacattgcagaagggatgattgtaaatcataagcac
tttggaaaaggggtaattgcagcaattttggaggaaaataaagacaaggttattgtagaa
attgattttaacggtgtaaggcgtaagtttgacttaattatgtgcctggaaaaaggtatt
ctaaaaatatattag
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