Acetivibrio saccincola: HVS_04250
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Entry
HVS_04250 CDS
T05223
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HVS_04250 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsc03019
]
HVS_04250 (recQ1)
03400 DNA repair and recombination proteins [BR:
hsc03400
]
HVS_04250 (recQ1)
Enzymes [BR:
hsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HVS_04250 (recQ1)
Messenger RNA biogenesis [BR:
hsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HVS_04250 (recQ1)
DNA repair and recombination proteins [BR:
hsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HVS_04250 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
Helicase_C
AAA_19
UvrD_C
Viral_helicase1
AAA_22
UvrD_C_2
AAA_30
ResIII
PhoH
AAA_16
DUF2164
SLFN-g3_helicase
Cas3-like_C_2
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AUG56792
UniProt:
A0A2K9DZ71
LinkDB
All DBs
Position
919572..924398
Genome browser
AA seq
1608 aa
AA seq
DB search
MSLIVFIDTEIHPKSRKVIDTGGIKEDGSPFHSGSVTDFIDFIKDSEFICGHNILNHDLK
YIKDALIGKKTGNLKVIDTVFLSPLLFPAKPYHSLLKDDKIQTEEMNNPLNDAIKARDLF
YDEVEAFKNIDEELKQIFYILLKDKKEFSAFFEYIKYNNNEINAEKLIENKFNAQICKNA
DISKIISDHPIELAYCLALINAGIKYSITPPWVLKQFPETRKVMFLLRDNPCLKGCPYCN
KAHDIYKGLKKFFGFDSFRKYGGEPLQEKAVKAAVENKSLLAVFPTGGGKSITFQLPALM
SGENVKGLTVVISPLQSLMKDQVDNLERKGITEAVTINGLLDPIERAVSIERIENGSASI
LYISPESLRSKTMERLLLGRNVVRFVIDEAHCFSAWGQDFRVDYLYIGDFIKSLMEKKNL
QKPIPVSCFTATARQRVIEDICNYFKEKLSLELEVFRADASRTNLRYKVLNKKSEEEKYQ
CVRELLEEKRCPTIIYVSRTRRAYHLAERLTQDGYCAKPYHGKMDKKERSQNQEEFIKGQ
VQIIVATSAFGMGVDKKDVGMVIHYEISSSLEDYVQEAGRAGRDENITADCYVLFDEEDL
DKHFILLNQTKVSIKEIQQVWKAIKDITKFRLKVSQSALEIARKAGWDDGIEGIETRVKT
AIAALEDAGYIKRGQNMPRVYANSILARNACEAISKINRSDKFNKKQKEKAVRIIRKLIS
NKYTKEPGDEEAESRIDYIADHLGLEKREVVEIVELLKEENILADLKDLKIYMKEGANEK
RALRILKTFLRIEKFLLSNLEYGEKVYNIKELNEQAEEEGIENISSESIKTIINFWKIKG
WIKSQVLSHSKDLMVIYCNSKIEDLKEKLSKRYELSQFILEYLYDKKSKDKKKEENDKNT
EVVNFSVFELKRAFQNRITLFKTEITTEDVEDAIFYLSKIEILLIEGGFLVLYNPMEIER
IEKDNKKRYRLEHYEKLREYYENKVQQIHIVGEYAKKMIEDYKEALQFVDDYFKLNYSSF
LNKYFKGGRQNEIKRNITPEKFRQIFGELSPSQLKIINDKESECIVVAAGPGSGKTRILV
HKLASLLLMEDVKHEQLLMLTFSRSSATEFKKRLLGLIGNAANFVDIKTFHSYSFDLLGR
VGTLEKSDRIVREAVEKIKKGEVERRKITKTVLVIDEAQDMDGDEFALINALMEHNENMR
VIAVGDDDQNIYEFRGSSSKYMEYLIKRKGAKVYELLENFRSKRNLVDFTNQFVKRISYR
LKSTPIVPFQNDNGKIKLVEYKSSNLITPLVADILSEDLSGSTCVLTRTNDEALQITALL
LKNGMEAKLIQSNEGFGIQNLLEVSFFLNQLKLDDSYMISEEVWEKAKGNLKETYAKSPN
YEICANLIKDFECVNNKNKYKTDLEVFIRESKLEDFYRGRAETILVSTFHRAKGREFDNV
YLMLDRFNIRSDEDLRLLYVAMTRAKENLTIHHNGDYFKYIKAEKMEVIKDENTYFPPDE
LVVQPGFKDVWLDFFIHSQNLIFNLNTGDELIVDGDYCCNLKGQKILCFSKQFKNKIRSI
NEAGYVPCGAKIKFIVYWQREDSDYKIRIVLPEIRFTFNPIDKKENIT
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaattgtttttattgatacagaaattcatccaaaaagcagaaaggtcattgac
acagggggtattaaggaagacggcagtccttttcactctggttctgttactgattttatt
gactttataaaggattctgaatttatctgtggtcacaatattctaaatcacgatttaaaa
tatattaaagatgcactgataggcaaaaagacaggtaatttaaaggttattgacactgtt
tttctttcacctctgttatttccggcaaaaccttaccactctttactaaaagacgataag
attcagacagaggagatgaacaatcccttaaacgatgcaataaaagcaagggatcttttc
tatgatgaagttgaagcctttaaaaatatagatgaagaactaaaacaaatattttatatt
ttattaaaagacaaaaaggaatttagcgctttttttgaatatatcaaatacaacaataac
gaaataaatgcagaaaaactaattgaaaataaatttaatgcacaaatatgtaaaaatgcc
gatatttcaaaaataatttcagaccatcccatagagcttgcatactgtctggctttgata
aatgcgggaataaaatattcaattacccctccctgggtgttaaagcagtttcctgaaaca
agaaaggttatgtttcttttgagggacaacccgtgccttaagggctgcccttattgtaat
aaagcccatgatatttacaagggattaaaaaaattttttggatttgattcttttagaaaa
tacggaggtgagcccttgcaggaaaaggctgtaaaggctgccgtggaaaacaaatccctt
cttgctgtatttcccaccggcgggggaaaatccattacatttcaactgcctgcactaatg
agcggagaaaatgtaaaaggtctaacggtggttatatcccccttgcagtctttaatgaaa
gaccaggtggacaacttagaaaggaagggtataacggaggcggtaactataaacggactc
cttgaccctattgagcgggcagtgtccattgaaaggattgaaaacggctctgcttccatc
ctttacatttcaccggagtctttgcgttcaaagacaatggaacggcttcttttaggccgg
aatgttgtcaggtttgttatagatgaagcccactgtttttcagcctggggacaggacttt
agggttgactacctttacattggggattttataaaatcactaatggaaaagaaaaatttg
caaaaaccaattcccgtctcctgctttactgcaacggcaaggcagagggtgattgaagat
atatgcaattattttaaagaaaagctttctcttgagttggaggttttcagggctgatgct
tcaagaaccaacctccgctacaaggtacttaataaaaagtctgaagaggaaaaataccag
tgtgtaagggaacttcttgaagaaaaaagatgccctacgattatctatgtttcacgcaca
agacgagcgtaccacctggcagaacggcttacacaggacggttattgtgcaaagccttac
cacggcaaaatggacaaaaaggaaagaagccaaaatcaagaagaatttataaagggtcag
gttcagattatagtggctacatctgcctttggaatgggagtcgataaaaaggatgtagga
atggttatccactatgaaatttcaagttcactggaagactacgtacaggaagccggaagg
gcaggcagggatgagaatataacagccgactgctatgtgcttttcgatgaagaggattta
gacaagcactttatactgttaaaccaaacaaaggtcagtataaaagaaatccagcaggtg
tggaaagccataaaagacataacaaaattccggttaaaagtttcccagtctgcactggaa
attgcaaggaaagccggatgggatgacggtattgagggaatagaaacaagggtaaagacc
gccattgcagccttagaggatgcaggttatataaaaagagggcagaacatgccaagggtg
tatgccaacagcattcttgcaagaaatgcatgtgaggcgatttctaaaataaacaggtct
gacaaattcaataaaaaacaaaaagaaaaggcagttagaattataagaaagcttatttct
aataaatacaccaaagaaccaggtgatgaagaagcagaatcaaggattgactatatagca
gaccatttaggacttgaaaaaagagaagtggtggagattgtagaattacttaaagaagaa
aatattttggcggatttaaaagatttaaagatttatatgaaggaaggcgcaaatgaaaaa
cgtgcattacgcatattaaaaacctttttgcgtattgaaaaatttttattgtcaaatttg
gagtacggggaaaaagtttacaacattaaagagctaaatgaacaggcagaagaggaagga
attgaaaacattagttctgaaagcataaaaaccatcataaatttttggaaaatcaaaggc
tggataaaaagccaggtacttagccactctaaagatctaatggtgatttactgcaattcc
aaaatagaagacttaaaagaaaagctttcaaaaagatatgaattgtcccaatttatttta
gaatatctttatgataaaaagagtaaagataaaaagaaggaggaaaatgataaaaatacg
gaggtagtaaatttttcggtttttgaattaaaaagggcttttcaaaacaggataactctt
tttaaaactgaaataaccactgaggacgtagaagatgctattttttacttgtccaaaata
gagattttgttaattgagggaggatttttggttttatacaatcccatggaaatagagcgt
atagaaaaagacaataaaaagagatacaggctggaacactacgaaaaactaagggaatac
tatgaaaataaagtgcagcaaatccacatagtaggggaatatgcaaagaaaatgatagag
gactacaaagaagcccttcaatttgtggatgattattttaaacttaattacagttctttt
ttaaataaatattttaaaggaggcagacaaaacgaaattaaaagaaatattaccccggaa
aagtttagacagatttttggggagctttccccgtcacagttgaaaattataaatgacaaa
gagtctgagtgcattgttgtggcggcagggccaggtagcgggaagacgaggattttggtt
cataaattagcttcccttcttcttatggaagatgtgaagcatgaacagctgttgatgctc
accttttccaggtcttcagccaccgaatttaaaaaacgcttgttggggcttattgggaat
gccgcaaattttgttgatataaaaacttttcactcctactcctttgatttgttggggagg
gtggggactttggagaagtcggacagaatagtaagggaagcggtggaaaaaattaaaaag
ggagaagttgaaagaaggaaaataacaaagacggttttggtaattgatgaagcccaggac
atggacggggatgaatttgcccttataaatgccctgatggaacacaatgaaaatatgcgg
gtaattgcagtgggggatgatgaccagaatatttatgaattcaggggttccagctcaaag
tatatggaatatttgataaaaagaaaaggagcaaaagtctacgaacttttagaaaatttc
aggagcaaaagaaatttagttgattttacaaaccagtttgtaaaaagaatatcttacagg
ctaaaaagcacccctattgttccttttcaaaatgacaacgggaaaataaaactggtggaa
tataaaagttccaatcttatcacgcctttggtggcagatatactgtctgaagacctttca
ggttccacctgtgtacttaccagaaccaatgatgaggcgctgcagattacggcactgctt
ctgaaaaacgggatggaggcaaaattaatacagtcaaatgaagggtttggcatacaaaat
cttttggaggtaagtttctttttaaatcagctaaaacttgatgattcttacatgataagt
gaggaagtctgggaaaaagcaaaggggaatctgaaagaaacctatgctaaaagtcccaat
tatgaaatttgcgctaatcttataaaggattttgaatgtgtaaataacaaaaataaatac
aaaacagatttggaagttttcatccgggagtcaaagcttgaagatttttataggggaagg
gcagaaacaattttggtatcaacttttcacagggcaaagggaagggagtttgacaatgtg
tacttgatgctggacagatttaatataaggtctgatgaggatttgagacttctctacgtt
gctatgacaagggcaaaagagaatttgacaattcaccacaacggggattattttaaatat
attaaggcggaaaaaatggaagtaataaaagatgagaatacatattttccgccggatgaa
ttggtggtacagccgggatttaaggatgtttggctggacttttttatacactcccaaaac
ctgatttttaatcttaataccggggacgaacttatagtggacggtgattattgctgcaat
ttaaagggacaaaaaattttatgtttttcaaaacagtttaaaaataaaatccggtctata
aatgaagcgggctatgtgccctgcggtgcaaagattaaatttatcgtttactggcaaagg
gaagattcagattataaaatacgtatagtgcttcctgaaatacgttttacttttaaccct
attgacaaaaaggaaaatatcacataa
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