Acetivibrio saccincola: HVS_05280
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Entry
HVS_05280 CDS
T05223
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsc
Acetivibrio saccincola
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsc03016
]
HVS_05280 (rtcB)
Enzymes [BR:
hsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HVS_05280 (rtcB)
Transfer RNA biogenesis [BR:
hsc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HVS_05280 (rtcB)
Prokaryotic type
tRNA splicing ligases
HVS_05280 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Anoct_dimer
IcmW
Motif
Other DBs
NCBI-ProteinID:
AUG56987
UniProt:
A0A2K9DZN4
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Position
1174583..1175797
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AA seq
404 aa
AA seq
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MGFLESGEVMIEIRGKYNTAKVFTNNLEEEAYAQILELCNQEFVKDSVIRIMPDAHAGAG
CTIGTTMTIQDKVVPNLVGVDIGCGMETIKLKEREIDLEKLDKVIHEFIPAGFDVRKKQH
SYVKKIDLEKLVCKNHVNIERAKLSIGTLGGGNHFIEVNKDKDGCLYLVVHSGSRHLGKQ
VAEYYQNLGYKEMVKNREHIARIVAELKSQGRENEIQVEIEKIKTEKINKSLAYVEGKSF
DDYINDMKLVQYFAVINRKAIVDEIISKMNFEIVEQFTTIHNYIDIENMILRKGAISAQK
GERVLIPINMRDGSLICVGKGNKDWNYSAPHGAGRIMSRRKAKETITLEEFKKTMEGIYS
TTVNKSTLDECALAYKPMEEIIENIQDTVEIIDIIKPIYNFKSA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttagaaagtggtgaggttatgatagaaatcaggggtaaatacaatacagca
aaagtttttactaacaatttagaagaggaggcttatgcacagatattagaactgtgcaac
caggagtttgtcaaagacagtgtcataaggattatgccggatgcccatgcaggtgcaggc
tgtaccattgggacaacaatgactatacaggataaggtggttcccaatttggtgggtgtt
gatataggatgcggcatggagactataaagcttaaggaaagggaaatagatttagaaaag
ctggataaggttattcatgaatttataccggcagggtttgatgttagaaaaaagcagcat
agttatgtcaaaaaaattgatttagaaaagttagtgtgcaaaaaccatgtaaatatagaa
agggcaaaattaagcatagggacattgggcgggggcaatcactttattgaggtgaacaag
gataaagacggatgcctctatctggtggtgcattcaggaagcaggcacttaggaaagcag
gttgcagaatactatcaaaacctgggatataaagaaatggtaaaaaacagggagcatatt
gcaaggatagtggcagagttgaaatcccagggacgtgaaaatgaaattcaagtggaaata
gagaaaataaagactgagaaaataaacaaatcccttgcatacgtggaagggaagagtttt
gatgactacattaatgatatgaaactggtacagtattttgcagttatcaacaggaaggcc
atagtggatgaaattataagtaaaatgaattttgaaattgttgaacagtttaccacaata
cacaattatatagatattgaaaatatgattctaagaaagggagctatttcagcgcaaaaa
ggggagcgggtgcttattccaattaatatgagggacggaagcctgatttgcgttggaaag
ggtaataaagactggaattattctgccccccacggtgcgggcaggattatgagcagaaga
aaggcaaaggaaaccattacactggaggagtttaaaaaaaccatggaaggcatttattca
acaacggtaaacaaatccactttggatgagtgtgccctggcgtataagcctatggaagaa
ataatagaaaacatacaagacaccgttgaaattattgatataataaaacccatatataat
tttaaatctgcttaa
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