Herbinix luporum: SD1D_0299
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Entry
SD1D_0299 CDS
T04072
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hsd
Herbinix luporum
Pathway
hsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SD1D_0299 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsd03021
]
SD1D_0299 (rpoC)
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_0299 (rpoC)
Enzymes [BR:
hsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SD1D_0299 (rpoC)
Transcription machinery [BR:
hsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SD1D_0299 (rpoC)
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SD1D_0299 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
SpoIISA_toxin
Motif
Other DBs
NCBI-ProteinID:
CUH91852
UniProt:
A0A0K8J2V4
LinkDB
All DBs
Position
I:310580..314419
Genome browser
AA seq
1279 aa
AA seq
DB search
MPDIMYNNEQEITYDAIRIGLASPEKIREWSRGEVRKPETINYRTLKPEKDGLFCERIFG
PSKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIPSR
MGLLLDLSPRTLEKVLYFASYIVLDKGNTDLQYKQVLNEKEKQEAIEKYGEGSFRVGMGA
EAVQELLRNIDLDKEVKDLKRALKDSTGQKRARIIKRLEVVEAFRESGNKPEWLILTVIP
VIPPDLRPMVQLDGGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKL
YQCGLPKEMAIELFKPFVMKELVARGTAHNIKSAKKMVERLQPEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAECRFL
LLSPNNLLKPSDGAPVTVPSQDMVLGIYYLTIERENDTGILHSFKSVDEAILAYENKTIT
LHEPILVKMTGINNEGVEESKMIKSTLGRFVFNEIIPQDLGFVDRSKPENFLELEINFLV
GKKQLKPILEKCINIHGATQTAELLDAVKTLGYKYATRAAFTVSISDMKVPEEKKQILAE
AEETVESISKEYRRGRMTEEERYNAVINTWKEADNELTETLLAGLDRFNNIKMMSDSGAR
GSDKQIKQLAGMRGLMADTSGRTIELPIKSNLREGLDVLEYFISAHGARKGLSDTALRTA
DSGYLTRRLVDVAQDLIIREADCCEHEEEITGMWVKAFTDGSEVIETLEERITGRFSCET
IYDAEGNIIVKANHMITPKRAAKIIETGVDKVKIRNVLSCKSHIGVCAKCYGANLATGEA
VQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIIS
EFGGTVTIKDTKKKREVIVTNPETMESKAYLIPYGSRIKVMEGDIIEAGDELTEGSVNPH
DILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKVRIEDNGDTNFLPGA
LVDIMEFNDVNKAMEEQGLQPAEGKQVMLGITKASLATNSFLSAASFQETTKVLTEAAIK
GKVDPLIGLKENVIIGKLIPAGTGMKRYRSVKLDTDIQEESLMAADMYPEGSYSQDFETL
EYPENQDQGDNYVEDGIPEVVYDEEKYTSGDNYIGREDSKPGVDDAHISLGEETHNDGDW
TETEFNLKGIIEDDYSDGL
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatattatgtataacaatgagcaggaaataacctatgatgcaattagaattggt
ctagcctcaccggaaaaaattagggaatggtccagaggcgaggtaagaaaacctgaaacc
attaactatagaaccttaaaaccggaaaaggatggcttgttctgcgaaagaatttttgga
cccagtaaggactgggaatgtcattgcggaaagtataaaaaaatcagatataaaggtgtc
gtttgtgaccgctgtggtgttgaggttacaaaagccagtgtacgccgtgaaagaatgggt
catattgaactggcagcaccggtatcccatatatggtattttaaaggaataccaagccgt
atgggtttactccttgacttgtcaccaaggaccctagaaaaagtactttactttgcttcc
tatattgtactggataagggaaataccgaccttcagtacaaacaggttcttaatgaaaag
gaaaaacaggaagcaattgagaaatatggtgaaggtagcttccgtgtaggaatgggtgcg
gaagctgtacaagagcttttaagaaatattgatttagataaggaagttaaggatttaaaa
agggcattaaaggattccacaggccaaaagcgggcgagaattattaaacgtctggaagtc
gttgaggcctttagggagtcgggaaataagccggagtggttaattcttaccgtaattccg
gttatccccccggatcttcgtcctatggttcagctagacggaggaagatttgcaacttcc
gatatgaatgatttatatagaagaataatcaacagaaataatcgcttaaagagactgtta
gaactaggagctccggatattattgttcgtaatgagaagagaatgttacaggaagctgtg
gatgccttaatagataacggcagaagaggaaggcctgtaacaggccccggcaaccgtcct
ttaaaatccttatctgatatgttaaaaggtaaacagggacgtttccgtcaaaatcttctt
ggtaagagagttgactattccggtcgttccgttatagttgtcggtcccgaattaaagctt
tatcagtgtggtcttcctaaggaaatggctattgaattgtttaagcctttcgttatgaaa
gagctggtagccagaggaaccgcccataatataaagtcagctaagaagatggtagagaga
cttcagcctgaggtatgggatgtattggaggatgttattaaagagcatccggttatgtta
aaccgtgctccgacccttcatagactgggtatccaagcatttgagcctgtacttgtagaa
ggtaaggcaattaagcttcatcctttggtatgtacagcatacaatgcggactttgacgga
gaccaaatggctgtccatgtacccttgtctgtggaagctcaggcagaatgtagattcctg
ttactgtcacctaacaacctattaaaaccctcagacggtgcaccggtaactgttccttct
caggatatggttctgggtatctattatctgaccatagaaagagaaaatgatacaggaatt
ttacattcctttaagagtgttgatgaagcaatcctagcctatgaaaataaaacaattaca
cttcatgagcctattttagtaaaaatgacaggtataaataatgaaggggtggaagagtct
aaaatgataaaatccaccttaggacgctttgttttcaatgaaataattccccaggaccta
ggatttgttgatagaagtaaacctgaaaatttccttgaacttgaaataaattttcttgta
ggaaagaagcagcttaaacctatccttgaaaaatgcattaatatccacggggcgactcag
acagcagaactgttagatgctgttaaaaccctaggttacaaatatgcaaccagggcggca
tttactgtttccatatccgatatgaaggttccggaagagaagaagcagattcttgcggaa
gcagaagaaaccgtagaaagtatttctaaagaatatcgccgtggtagaatgacagaagag
gaacgttacaatgctgtaattaatacttggaaggaagcagacaatgaacttactgaaacg
cttcttgcaggtttagatagatttaacaatattaaaatgatgtcagactccggcgcccgt
ggttctgataagcagattaagcagctggcaggtatgcgtggactgatggctgatacatca
ggccgtaccattgaactgcctatcaaatccaaccttcgtgaaggacttgatgtacttgaa
tactttatatcagcccatggagccagaaaaggtctttccgatactgctcttcgtactgcg
gactcaggatacctgaccagacgtttggttgacgtagctcaggatttaatcatccgtgag
gcagattgctgcgaacatgaagaagaaattacaggtatgtgggtaaaggcattcactgac
ggcagtgaagttattgaaacccttgaggaaagaataacaggaagattttcctgcgagacc
atatatgatgcagaaggtaatataattgtaaaagcaaatcatatgattacaccaaagcgg
gcagctaagattatagaaaccggtgtagataaggttaagattcgtaacgtactgtcatgt
aagtcccatatcggtgtatgtgcaaaatgttatggagccaacttagctaccggtgaagct
gttcaagtaggtgaagcggtaggaataattgcggcacagtccataggtgaaccgggaacc
cagcttacaatgcgtaccttccatacaggtggtgtggccggtgacgatattacacagggt
cttcctcgtgttgaggaactttttgaggccagaaagccaaagggacttgcaattatttca
gaatttggcggcacagttaccattaaggacaccaagaagaaaagagaagttattgtaaca
aatcctgaaactatggaatctaaggcatatcttattccttacggttcaaggattaaggtt
atggagggagacattatcgaggccggtgacgagctgactgaaggtagtgtaaatccacat
gatatccttaaaataaaaggagtccgtgcagttcaggattatatgatacaagaagttcag
cgggtatatcgcctgcagggtgttgaaataaatgataagcatatcgaagttatagttcgt
cagatgcttaagaaagtccgtatagaagataacggtgacaccaacttcctacccggtgct
ttggtagacattatggagtttaatgatgtaaataaggctatggaagaacagggcttacag
ccggcagagggtaaacaggtaatgctgggaattacaaaagcttccctggcaactaattcc
ttcttgtcagcagcatcattccaagaaacaactaaagtcttaaccgaagccgcaattaaa
ggtaaggtggatcctttaataggacttaaggaaaatgttataatcggtaagcttattcct
gccggtaccggcatgaagagataccgttcagttaagttggatacagatatccaagaagaa
agcttaatggctgctgatatgtatcctgaaggcagttatagccaagactttgaaacctta
gaataccctgaaaaccaggaccagggggataattatgtagaagacggaatacctgaagtt
gtatatgatgaagaaaaatataccagcggcgataactatattggccgtgaagacagtaaa
cccggcgtagacgatgctcatatttcccttggtgaggaaacccacaatgacggtgactgg
acagaaacagaatttaatttaaaaggcataattgaagacgattatagtgacggtctataa
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integrated database retrieval system
