Herbinix luporum: SD1D_0413
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Entry
SD1D_0413 CDS
T04072
Symbol
clpC
Name
(GenBank) Negative regulator of genetic competence ClpC/MecB
KO
K03696
ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
hsd
Herbinix luporum
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
hsd03110
]
SD1D_0413 (clpC)
Chaperones and folding catalysts [BR:
hsd03110
]
Heat shock proteins
HSP100
SD1D_0413 (clpC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
ClpB_D2-small
Clp_N
AAA
AAA_5
AAA_16
Sigma54_activat
AAA_22
nSTAND3
AAA_7
AAA_18
TniB
IstB_IS21
Zeta_toxin
AAA_3
AAA_24
RuvB_N
NACHT
AAA_28
UVR
T2SSE
Torsin
AAA_25
DNA_pol3_delta2
HisK-N-like
Motif
Other DBs
NCBI-ProteinID:
CUH91966
UniProt:
A0A0K8J2U7
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Position
I:423611..426055
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AA seq
814 aa
AA seq
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MNDKFTQNAIQAINSARETALRLNHNYIGTEHILMGLMQVDGVASRVLRENGVTVEKVME
LVNQLIAPSSGVEMMEGGDFTPRSKRILDQSQREAARFKAQQAGTEHILIALLREQDCIA
VRLLNTLGVNLQKVYIDLLQAAGVDISTAKNDYSASKNKGKAKSSTPTLDQYSRDLTQYA
RDGKLDPVIGRETEIQRVVQILSRRTKNNPCLVGEPGVGKTAIAEGLALKIVEGNIPETI
KDKRVVTLDLSGMVAGSKYRGEFEERIKKVINEVINDGNVLLFIDELHTIIGAGGAEGAI
DASNILKPSLARGELQIIGATTREEYRKYIEKDSALERRFQPVVVEEPSEEEAIQIMFGL
RDKYEAHHKVRITDDALTAAVKLSSRYINDRYLPDKAIDLMDEAASKVRLSAYTTSPTVK
ELEKEIIRLEEEKEKAIKEEAYEKAGDIKKQQQALQEELEKQKLVEEKQRAEYQLVVSEA
EIADIVSSWTKIPVKKLEEEETQRLQNLENILHERVIGQDEAVTAVSKAIRRGRVGLKDP
NRPIGSFLFLGPTGVGKTELSKALAEAMFGTENAIIRVDMSEYMEKHSVSKLIGSPPGYV
GYDEGGQLSEKVRQNPYSVILFDEIEKAHPDVFNILLQVLDDGHITDAQGRRVSFKNTII
IMTSNAGAQNIISPKRLGFTSVVDKDEDYRRMKDAVMDEVKRIFRPEFINRIDEIIVFHS
LTKDHIKEIVGIMVNNIAKRSKAQMNISLEASKEALEYLAETGYDEKFGARPLRRAIQTN
VEDKLAEAILAGNVKEGDQVKIDYLDNEIVLNTI
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataaatttacacaaaatgcaatacaagcgattaattccgctagggaaactgct
ttacgtcttaaccataattatattggtacagagcatatcctaatgggtttaatgcaggtt
gatggagttgcctccagagtactaagagaaaatggcgtaactgttgagaaggttatggag
ctggttaatcagcttatagcacctagcagcggcgttgaaatgatggaggggggagatttt
accccaagatctaagcgaattttagatcaaagtcagagggaagcagccagatttaaagcc
caacaagcaggtaccgagcatatcttaattgccttgcttagggagcaggattgtatagct
gtaaggcttttaaatacccttggagttaatctacagaaggtatatattgatttgttgcag
gcagccggtgtagatatcagtactgctaagaatgattactctgccagtaaaaataagggt
aaggctaagtcctctaccccaactcttgaccaatacagcagagatttaacccaatatgcc
agagatggcaaattagatcctgtaattggcagagagactgaaattcaaagagtggttcag
atactaagcagacggaccaagaataacccttgcttagtgggtgaaccgggagtgggtaag
acagctattgctgaaggccttgcccttaaaatagttgaaggaaatattccggaaaccatt
aaggataaaagggtagttaccttggatttatccggtatggtagcaggctctaaatatcgt
ggtgaatttgaagaaagaattaagaaggtaataaatgaagttataaacgacggaaatgta
cttttatttatcgatgagcttcataccataataggggcaggtggagcagaaggggcaatt
gatgcttcaaatatcctaaaaccctcattggctagaggagagcttcagattataggggct
accactagggaggagtatcgcaaatacattgaaaaagattcagccttagaaagaagattt
caacctgtggttgttgaagagccttctgaggaagaggcaatccagattatgtttggactt
cgggataagtatgaggcacaccacaaggtaagaattaccgacgatgcccttactgcagct
gtcaaattatccagccgttatattaatgaccgttatcttccggataaagcaatagactta
atggatgaggcagcttctaaggtaagattaagtgcttatactacatctcctacagttaag
gaattagagaaagaaattatccggctagaggaagaaaaggaaaaagcaatcaaagaggaa
gcctatgaaaaagccggtgatattaaaaagcagcagcaagcccttcaggaagagttagag
aagcaaaagcttgttgaagaaaagcaaagagctgaatatcaactggttgtaagtgaagcg
gagatagctgatattgtatctagttggactaagatacctgttaaaaagctggaagaagaa
gagacacaaagactgcagaatctggagaatatccttcatgaaagagttattggccaagac
gaagcggtgacagctgtttctaaagcaatcagaagaggtagggtgggactaaaagatcct
aacagacctatcggttccttccttttcctaggtcctaccggtgtaggtaagacagagcta
tctaaggcactggcagaagcaatgtttggtactgaaaatgctataatacgggttgatatg
tcagaatatatggagaaacacagtgtaagtaagctgataggatcacctcccggttatgtt
ggatatgatgaaggtggacaattaagtgaaaaggtaagacaaaatccttattctgtgatt
ttatttgacgagattgaaaaagcccatccggatgtgtttaatattcttttacaggtatta
gatgacggacatattacagatgctcagggaagaagagtcagctttaagaataccataata
attatgacctccaatgcaggggctcaaaatattatctctccaaaacgcctcggttttact
tctgttgtagataaagatgaagactacagacggatgaaagatgcagttatggatgaggtt
aagagaatattcagaccggagtttattaacagaatcgatgaaattattgtattccactct
ttaaccaaagaccatattaaggaaattgtgggaattatggtaaataatattgcaaaaaga
agtaaagcccagatgaatatatccttagaagccagtaaagaagcattagagtatttggcg
gaaacaggatatgatgaaaagttcggtgcaagacctcttagaagggcaattcagactaat
gttgaagataaattggccgaggctatattggcgggaaatgttaaagagggagaccaggtt
aaaatcgattatttagataatgaaatagttttaaatacaatttaa
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