Herbinix luporum: SD1D_0423
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Entry
SD1D_0423 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
hsd
Herbinix luporum
Pathway
hsd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SD1D_0423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_0423
Enzymes [BR:
hsd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SD1D_0423
DNA repair and recombination proteins [BR:
hsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SD1D_0423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CUH91975
UniProt:
A0A0K8J3B0
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All DBs
Position
I:432317..433144
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AA seq
275 aa
AA seq
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MKIKNKNFDIKQIAESGQCFRMNPIGPNRYSLVAFDRYIELEQLEDDLIEITCSENDYNK
IWKDYFDLDYDYGYIVDNLIKGPDEFLNKAAEYGRGIRILRQDPFEMLISFIISQNKNIP
SIKTCIERISQVYGKRCIDGTTGSIYYTFPSAKVLAEAKKEDLRALKLGYRDEYIIGAAK
AVISGELNLEDLKVCSHEEAVKSLKTVKGIGDKVANCISLFGLHHIEAFPVDVWMKRVLS
EIYDNKFDPNSYQGYAGIVQQYMFYYIRHVYGVSN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaaaaataaaaattttgatataaagcagattgcagaatctggccaatgcttt
cgcatgaatcctatagggccaaatagatatagcctagtagcatttgaccgttacatagag
cttgaacagttagaagatgatttgattgaaataacttgcagtgaaaatgattacaataag
atatggaaggattattttgatcttgattatgattacggttatatagtggataatttaata
aaaggtcccgatgaatttttaaataaggcagcagagtatggaaggggcatacgaatctta
agacaggatccttttgagatgcttattagctttattatttctcaaaataaaaatattcca
tctattaaaacttgtatagaaagaataagccaggtctatgggaaacgttgtatagatggt
actacaggttcaatatattatacatttccttcggctaaggtactggctgaggcaaaaaaa
gaagatcttagggccttaaaattaggatacagggatgaatatattataggagctgctaag
gctgtcatatccggtgagcttaatttggaagatcttaaagtttgcagtcacgaagaggcg
gttaagtctctaaaaactgttaaaggtataggtgataaggtggcaaattgcatttcactt
tttggcctgcatcatatagaagcctttcctgtggatgtatggatgaaaagggtactttca
gagatttatgataataaatttgatcccaatagctaccaaggttatgccggaattgtccag
cagtatatgttttattatataaggcatgtttatggagtaagcaattag
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